JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ID3_chr1_23552926_23564501	0/1	a0001	119	377	76	63	181	15	41	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	1/0	a0002	119	31	0	19	5	3	3	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	a0003	119	19	17	2	0	0	0	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	a0004	119	4	3	1	0	0	0	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	a0005	119	2	2	0	0	0	0	copy fasta	ID3	chr1	23552926	23564501
ID3_chr1_23552926_23564501	0/0	a0006	119	1	0	1	0	0	0	copy fasta	ID3	chr1	23552926	23564501
ID4_chr6_19832370_19847197	1/1	a0001	161	467	96	84	218	18	49	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	a0002	161	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	a0003	161	1	0	0	0	0	1	copy fasta	ID4	chr6	19832370	19847197
ID4_chr6_19832370_19847197	0/0	a0004	161	1	0	0	1	0	0	copy fasta	ID4	chr6	19832370	19847197
IDE_chr10_92446684_92579093	1/1	a0001	1019	306	76	71	110	14	33	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	a0002	1019	5	0	0	5	0	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	a0003	1019	1	0	0	0	0	1	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	a0004	1019	1	0	0	1	0	0	copy fasta	IDE	chr10	92446684	92579093
IDE_chr10_92446684_92579093	0/0	a0005	1019	1	0	1	0	0	0	copy fasta	IDE	chr10	92446684	92579093
IDH1_chr2_208231229_208260071	1/1	a0001	414	338	84	57	151	8	36	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	a0002	414	12	2	5	3	2	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	a0003	414	6	6	0	0	0	0	copy fasta	IDH1	chr2	208231229	208260071
IDH1_chr2_208231229_208260071	0/0	a0004	414	2	0	0	0	2	0	copy fasta	IDH1	chr2	208231229	208260071
IDH2_chr15_90078045_90107468	1/1	a0001	452	437	93	84	192	18	48	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	a0002	452	1	1	0	0	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	a0003	452	1	0	0	1	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH2_chr15_90078045_90107468	0/0	a0004	452	1	0	0	1	0	0	copy fasta	IDH2	chr15	90078045	90107468
IDH3A_chr15_78144362_78176945	1/1	a0001	366	384	84	70	176	10	42	copy fasta	IDH3A	chr15	78144362	78176945
IDH3A_chr15_78144362_78176945	0/0	a0002	366	2	0	0	2	0	0	copy fasta	IDH3A	chr15	78144362	78176945
IDH3B_chr20_2653395_2669216	1/1	a0001	385	437	90	84	198	18	45	copy fasta	IDH3B	chr20	2653395	2669216
IDH3B_chr20_2653395_2669216	0/0	a0002	385	1	0	0	0	0	1	copy fasta	IDH3B	chr20	2653395	2669216
IDH3B_chr20_2653395_2669216	0/0	a0003	385	1	1	0	0	0	0	copy fasta	IDH3B	chr20	2653395	2669216
IDH3B_chr20_2653395_2669216	0/0	a0004	385	1	1	0	0	0	0	copy fasta	IDH3B	chr20	2653395	2669216
IDH3G_chrX_153780768_153799375	1/1	a0001	393	282	69	54	116	11	30	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	a0002	393	7	7	0	0	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	a0003	393	4	0	0	4	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	a0004	393	2	0	0	2	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	a0005	148	1	0	0	1	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	a0006	393	1	0	0	1	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	a0007	306	1	0	0	1	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDH3G_chrX_153780768_153799375	0/0	a0008	254	1	0	0	1	0	0	copy fasta	IDH3G	chrX	153780768	153799375
IDI1_chr10_1034419_1054119	1/1	a0001	284	430	96	74	197	18	43	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	a0002	284	3	0	0	0	0	3	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	a0003	284	2	0	2	0	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	a0004	166	1	0	0	1	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	a0005	284	1	0	0	1	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI1_chr10_1034419_1054119	0/0	a0006	284	1	0	0	1	0	0	copy fasta	IDI1	chr10	1034419	1054119
IDI2_chr10_1013910_1030859	0/0	a0000	0	27	13	3	7	0	4	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	1/1	a0001	227	400	79	75	182	18	44	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	a0002	143	5	1	4	0	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	a0003	227	1	1	0	0	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDI2_chr10_1013910_1030859	0/0	a0004	227	1	0	0	1	0	0	copy fasta	IDI2	chr10	1013910	1030859
IDNK_chr9_83618143_83649123	1/0	a0001	187	306	89	51	114	14	37	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/1	a0002	187	21	1	7	6	2	4	copy fasta	IDNK	chr9	83618143	83649123