Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALOX5_chr10_45369216_45451117	0/0	a0002	674	16	5	1	9	0	1	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	a0003	674	2	0	0	0	0	2	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	a0004	674	1	0	0	1	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	a0005	674	1	0	0	1	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	a0006	370	1	1	0	0	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	a0007	581	1	0	0	1	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	a0008	674	1	0	0	1	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	a0009	674	1	0	0	1	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOXE3_chr17_8090900_8123514	1/1	a0001	711	382	84	71	175	18	32	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	a0002	711	25	14	1	2	0	8	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	a0003	711	8	1	7	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	a0004	711	2	0	2	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	a0005	711	2	0	0	0	0	2	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	a0006	711	1	0	0	1	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	a0007	711	1	1	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	a0008	711	1	0	1	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALPG_chr2_232401844_232415714	0/0	a0001	532	171	30	35	81	7	18	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	1/0	a0002	532	65	15	11	19	5	14	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/1	a0003	532	65	17	12	24	4	7	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0004	532	53	7	5	37	2	2	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0005	532	52	6	10	33	0	3	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0006	532	7	7	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0007	532	4	4	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0008	532	4	4	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0009	532	3	2	1	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0010	532	2	0	0	2	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0011	532	1	0	0	0	0	1	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0012	532	1	0	0	0	0	1	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0013	532	1	1	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0014	532	1	0	0	1	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0015	532	1	0	0	1	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0016	532	1	1	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0017	532	1	0	0	1	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	a0018	532	1	0	0	1	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPI_chr2_232451153_232465753	1/1	a0001	528	425	90	76	192	18	47	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	a0002	528	5	0	0	5	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	a0003	528	5	0	0	5	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	a0004	528	4	4	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	a0005	528	1	1	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	a0006	528	1	1	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	a0007	528	1	1	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	a0008	528	1	0	0	1	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	a0009	528	1	1	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	a0010	528	1	0	0	1	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	a0011	528	1	0	0	0	0	1	copy fasta	ALPI	chr2	232451153	232465753
ALPK1_chr4_112292369_112447621	0/1	a0001	1244	179	53	27	73	7	18	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	1/0	a0002	1244	73	10	23	29	1	9	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0003	1244	20	5	10	0	2	3	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0004	1243	7	0	1	5	0	1	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0005	1244	6	0	0	6	0	0	copy fasta	ALPK1	chr4	112292369	112447621