JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IDNK_chr9_83618143_83649123	0/0	a0003	187	2	2	0	0	0	0	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/0	a0004	187	1	1	0	0	0	0	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/0	a0005	187	1	0	0	0	0	1	copy fasta	IDNK	chr9	83618143	83649123
IDNK_chr9_83618143_83649123	0/0	a0006	178	1	1	0	0	0	0	copy fasta	IDNK	chr9	83618143	83649123
IDO1_chr8_39908891_39933790	1/1	a0001	403	412	91	76	188	14	41	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	a0002	403	4	4	0	0	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	a0003	403	2	2	0	0	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	a0004	403	1	1	0	0	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	a0005	403	1	1	0	0	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	a0006	403	1	0	0	0	0	1	copy fasta	IDO1	chr8	39908891	39933790
IDO1_chr8_39908891_39933790	0/0	a0007	403	1	1	0	0	0	0	copy fasta	IDO1	chr8	39908891	39933790
IDO2_chr8_39929651_40021392	1/0	a0001	407	110	32	11	56	1	9	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/1	a0002	407	102	23	25	34	3	16	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	a0003	345	65	1	18	38	3	5	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	a0004	345	21	8	3	9	0	1	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	a0005	345	20	2	8	6	3	1	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	a0006	407	14	9	4	0	0	1	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	a0007	407	7	0	0	4	0	3	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	a0008	407	6	6	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	a0009	407	5	5	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	a0010	407	4	4	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	a0011	407	1	1	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	a0012	407	1	0	0	0	0	1	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	a0013	407	1	0	0	1	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	a0014	407	1	0	0	0	0	1	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	a0015	407	1	0	1	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDO2_chr8_39929651_40021392	0/0	a0016	407	1	1	0	0	0	0	copy fasta	IDO2	chr8	39929651	40021392
IDS_chrX_149471988_149510306	1/1	a0001	550	284	67	51	122	10	32	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	a0002	550	7	7	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	a0003	550	4	4	0	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	a0004	45	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	a0005	550	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	a0006	550	1	0	1	0	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	a0007	550	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	a0008	343	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	a0009	550	1	0	0	0	1	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	a0010	550	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDS_chrX_149471988_149510306	0/0	a0011	16	1	0	0	1	0	0	copy fasta	IDS	chrX	149471988	149510306
IDUA_chr4_982044_1009564	0/0	a0001	653	271	49	50	130	8	34	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0002	653	55	1	20	27	7	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0003	653	45	8	9	16	3	9	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0004	653	12	12	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0005	653	12	8	1	1	0	2	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0006	653	6	6	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0007	653	4	4	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0008	653	3	3	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0009	653	2	0	0	2	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0010	653	2	0	0	2	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0011	653	2	2	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0012	653	1	0	0	1	0	0	copy fasta	IDUA	chr4	982044	1009564