JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IDUA_chr4_982044_1009564	0/0	a0013	653	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0014	653	1	0	0	1	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0015	653	1	0	0	0	0	1	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0016	653	1	0	0	1	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0017	653	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0018	653	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0019	653	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0020	653	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0021	653	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0022	653	1	1	0	0	0	0	copy fasta	IDUA	chr4	982044	1009564
IDUA_chr4_982044_1009564	0/0	a0023	653	1	0	0	1	0	0	copy fasta	IDUA	chr4	982044	1009564
IER2_chr19_13145411_13159911	1/1	a0001	223	307	93	62	100	8	42	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	a0002	223	19	0	7	4	4	4	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	a0003	223	3	2	1	0	0	0	copy fasta	IER2	chr19	13145411	13159911
IER2_chr19_13145411_13159911	0/0	a0004	223	1	1	0	0	0	0	copy fasta	IER2	chr19	13145411	13159911
IER3IP1_chr18_47147834_47181364	1/1	a0001	82	376	79	71	172	16	36	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	a0002	82	1	1	0	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3IP1_chr18_47147834_47181364	0/0	a0003	82	1	0	1	0	0	0	copy fasta	IER3IP1	chr18	47147834	47181364
IER3_chr6_30738199_30749547	0/1	a0001	156	438	92	77	205	18	45	copy fasta	IER3	chr6	30738199	30749547
IER3_chr6_30738199_30749547	0/0	a0002	156	7	0	5	1	0	1	copy fasta	IER3	chr6	30738199	30749547
IER3_chr6_30738199_30749547	0/0	a0003	156	2	2	0	0	0	0	copy fasta	IER3	chr6	30738199	30749547
IER3_chr6_30738199_30749547	0/0	a0004	147	1	0	1	0	0	0	copy fasta	IER3	chr6	30738199	30749547
IER3_chr6_30738199_30749547	0/0	a0005	156	1	0	1	0	0	0	copy fasta	IER3	chr6	30738199	30749547
IER5L_chr9_129170552_129183261	1/1	a0001	404	341	81	58	161	9	30	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	a0002	404	77	11	16	26	7	17	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	a0003	401	5	4	0	1	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	a0004	404	1	1	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	a0005	404	1	1	0	0	0	0	copy fasta	IER5L	chr9	129170552	129183261
IER5L_chr9_129170552_129183261	0/0	a0006	401	1	0	0	0	0	1	copy fasta	IER5L	chr9	129170552	129183261
IER5_chr1_181083700_181097900	0/0	a0001	327	180	48	48	58	8	18	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	a0002	327	145	25	23	70	4	23	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/1	a0003	327	23	4	1	12	2	3	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	1/0	a0004	327	13	10	2	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	a0005	327	11	10	0	0	0	1	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	a0006	327	1	1	0	0	0	0	copy fasta	IER5	chr1	181083700	181097900
IER5_chr1_181083700_181097900	0/0	a0007	327	1	0	0	0	0	1	copy fasta	IER5	chr1	181083700	181097900
IFFO1_chr12_6534539_6561042	1/1	a0001	571	434	99	80	196	12	45	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	a0002	571	1	1	0	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	a0003	571	1	0	1	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	a0004	571	1	0	0	0	0	1	copy fasta	IFFO1	chr12	6534539	6561042
IFFO1_chr12_6534539_6561042	0/0	a0005	571	1	0	1	0	0	0	copy fasta	IFFO1	chr12	6534539	6561042
IFFO2_chr1_18899280_18961676	1/1	a0001	517	360	82	74	147	16	39	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	a0002	517	7	0	0	4	0	3	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	a0003	517	4	4	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	a0004	517	2	2	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	a0005	517	2	2	0	0	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFFO2_chr1_18899280_18961676	0/0	a0006	517	1	0	0	1	0	0	copy fasta	IFFO2	chr1	18899280	18961676
IFI16_chr1_159004907_159060151	0/1	a0001	785	160	17	38	76	7	21	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	0/0	a0002	785	64	10	0	44	0	10	copy fasta	IFI16	chr1	159004907	159060151
IFI16_chr1_159004907_159060151	1/0	a0003	785	35	23	1	10	0	0	copy fasta	IFI16	chr1	159004907	159060151