JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IFI44_chr1_78644831_78669073	0/0	a0002	444	70	19	10	36	0	5	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	a0003	444	3	1	0	0	0	2	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	a0004	444	2	0	0	2	0	0	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	a0005	444	2	0	0	0	0	2	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	a0006	444	1	1	0	0	0	0	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	a0007	444	1	0	0	0	0	1	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	a0008	444	1	0	0	1	0	0	copy fasta	IFI44	chr1	78644831	78669073
IFI44_chr1_78644831_78669073	0/0	a0009	444	1	0	0	0	0	1	copy fasta	IFI44	chr1	78644831	78669073
IFI6_chr1_27661064_27677192	1/1	a0001	130	355	95	62	132	18	46	copy fasta	IFI6	chr1	27661064	27677192
IFI6_chr1_27661064_27677192	0/0	a0002	130	1	1	0	0	0	0	copy fasta	IFI6	chr1	27661064	27677192
IFIH1_chr2_162262074_162323684	0/0	a0001	1025	77	36	16	24	0	1	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	1/1	a0002	1025	66	26	9	24	0	5	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	a0003	1025	63	14	18	14	5	12	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	a0004	1025	7	1	2	0	3	1	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	a0005	1025	1	0	1	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	a0006	1025	1	0	0	0	1	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	a0007	1025	1	1	0	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	a0008	1025	1	1	0	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	a0009	1025	1	1	0	0	0	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	a0010	1025	1	0	0	0	0	1	copy fasta	IFIH1	chr2	162262074	162323684
IFIH1_chr2_162262074_162323684	0/0	a0011	1025	1	0	0	0	1	0	copy fasta	IFIH1	chr2	162262074	162323684
IFIT1B_chr10_89373056_89390205	1/1	a0001	474	410	71	77	200	16	44	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	a0002	474	18	17	1	0	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	a0003	474	4	4	0	0	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	a0004	474	3	0	0	3	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	a0005	474	2	2	0	0	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	a0006	474	1	0	0	1	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	a0007	474	1	0	0	1	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1B_chr10_89373056_89390205	0/0	a0008	474	1	0	0	1	0	0	copy fasta	IFIT1B	chr10	89373056	89390205
IFIT1_chr10_89387623_89411487	1/1	a0001	478	423	90	76	193	16	46	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	a0002	478	1	0	1	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	a0003	478	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	a0004	261	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	a0005	478	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	a0006	478	1	0	1	0	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	a0007	478	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT1_chr10_89387623_89411487	0/0	a0008	478	1	0	0	1	0	0	copy fasta	IFIT1	chr10	89387623	89411487
IFIT2_chr10_89297046_89314271	0/0	a0001	472	277	63	34	144	7	29	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	a0002	472	85	23	8	44	1	9	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	1/0	a0003	472	44	2	23	4	4	10	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/1	a0004	472	17	0	10	0	4	2	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	a0005	472	3	3	0	0	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	a0006	472	2	0	0	2	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	a0007	472	1	0	1	0	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	a0008	472	1	0	0	1	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	a0009	472	1	0	0	1	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT2_chr10_89297046_89314271	0/0	a0010	472	1	1	0	0	0	0	copy fasta	IFIT2	chr10	89297046	89314271
IFIT3_chr10_89322997_89345968	1/1	a0001	490	385	76	71	180	14	42	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	a0002	490	13	12	1	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	a0003	490	2	2	0	0	0	0	copy fasta	IFIT3	chr10	89322997	89345968