JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IFIT3_chr10_89322997_89345968	0/0	a0004	238	1	0	0	1	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT3_chr10_89322997_89345968	0/0	a0005	490	1	0	0	1	0	0	copy fasta	IFIT3	chr10	89322997	89345968
IFIT5_chr10_89409568_89425997	1/1	a0001	482	407	76	74	199	14	42	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	a0002	482	8	8	0	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	a0003	482	4	4	0	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	a0004	482	1	0	0	1	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	a0005	482	1	1	0	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFIT5_chr10_89409568_89425997	0/0	a0006	482	1	1	0	0	0	0	copy fasta	IFIT5	chr10	89409568	89425997
IFITM10_chr11_1727406_1755595	1/1	a0001	228	399	91	73	176	14	43	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	a0002	228	2	0	0	2	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	a0003	228	2	0	0	2	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	a0004	228	1	1	0	0	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	a0005	228	1	0	1	0	0	0	copy fasta	IFITM10	chr11	1727406	1755595
IFITM10_chr11_1727406_1755595	0/0	a0006	228	1	0	0	0	0	1	copy fasta	IFITM10	chr11	1727406	1755595
IFITM1_chr11_309040_320272	0/1	a0001	125	33	6	16	0	6	4	copy fasta	IFITM1	chr11	309040	320272
IFITM1_chr11_309040_320272	1/0	a0002	125	1	0	0	0	0	0	copy fasta	IFITM1	chr11	309040	320272
IFITM2_chr11_302816_314395	1/0	a0001	132	19	1	10	0	5	2	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	a0002	132	9	1	5	0	2	1	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	a0003	132	3	0	1	0	1	1	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	a0004	132	1	1	0	0	0	0	copy fasta	IFITM2	chr11	302816	314395
IFITM2_chr11_302816_314395	0/0	a0005	132	1	1	0	0	0	0	copy fasta	IFITM2	chr11	302816	314395
IFITM3_chr11_314676_325860	1/0	a0001	133	31	4	14	0	8	4	copy fasta	IFITM3	chr11	314676	325860
IFITM5_chr11_293200_304526	0/0	a0001	132	284	75	45	131	4	29	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	1/1	a0002	132	146	21	32	60	12	19	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	a0003	132	1	1	0	0	0	0	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	a0004	132	1	0	0	1	0	0	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	a0005	132	1	0	1	0	0	0	copy fasta	IFITM5	chr11	293200	304526
IFITM5_chr11_293200_304526	0/0	a0006	132	1	1	0	0	0	0	copy fasta	IFITM5	chr11	293200	304526
IFNA10_chr9_21201181_21212143	1/0	a0001	189	257	53	57	97	8	41	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	a0002	19	194	40	26	119	6	3	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	a0003	189	2	2	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	a0004	189	2	0	1	0	0	1	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	a0005	189	1	1	0	0	0	0	copy fasta	IFNA10	chr9	21201181	21212143
IFNA10_chr9_21201181_21212143	0/0	a0006	189	1	0	0	0	0	1	copy fasta	IFNA10	chr9	21201181	21212143
IFNA13_chr9_21362372_21373057	1/1	a0001	190	445	77	83	221	16	46	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	a0002	189	13	13	0	0	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	a0003	190	5	5	0	0	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	a0004	189	1	1	0	0	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	a0005	190	1	0	0	1	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA13_chr9_21362372_21373057	0/0	a0006	190	1	0	1	0	0	0	copy fasta	IFNA13	chr9	21362372	21373057
IFNA14_chr9_21234002_21245005	1/1	a0001	189	442	97	76	204	14	49	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	a0002	189	5	0	1	4	0	0	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	a0003	189	1	0	1	0	0	0	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	a0004	189	1	0	0	0	0	1	copy fasta	IFNA14	chr9	21234002	21245005
IFNA14_chr9_21234002_21245005	0/0	a0005	182	1	1	0	0	0	0	copy fasta	IFNA14	chr9	21234002	21245005
IFNA16_chr9_21211373_21222311	1/1	a0001	189	450	92	79	219	13	45	copy fasta	IFNA16	chr9	21211373	21222311
IFNA16_chr9_21211373_21222311	0/0	a0002	189	6	6	0	0	0	0	copy fasta	IFNA16	chr9	21211373	21222311
IFNA16_chr9_21211373_21222311	0/0	a0003	189	5	1	3	0	1	0	copy fasta	IFNA16	chr9	21211373	21222311
IFNA16_chr9_21211373_21222311	0/0	a0004	189	1	0	0	1	0	0	copy fasta	IFNA16	chr9	21211373	21222311
IFNA16_chr9_21211373_21222311	0/0	a0005	189	1	0	0	0	0	1	copy fasta	IFNA16	chr9	21211373	21222311