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Item	Value
geneid	10410
ensemblid	ENSG00000142089.17
hgncid	5414
symbol	IFITM3
name	interferon induced transmembrane protein 3
refseq_nuc	NM_021034.3
refseq_prot	NP_066362.2
ensembl_nuc	ENST00000399808.5
ensembl_prot	ENSP00000382707.4
mane_status	MANE Select
chr	chr11
start	319676
end	320860
strand	-
ver	v1.2
region	chr11:319676-320860
region5000	chr11:314676-325860
regionname0	IFITM3_chr11_319676_320860
regionname5000	IFITM3_chr11_314676_325860

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/0	133	31	4	14	0	8	4	0	IFITM3_chr11_314676_325860	IFITM3	MNHTV others(128): Show MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRS ETSVPDHVVWSLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYA STAKCLNIWALILGILMTILLIVIPVLIFQAYG	chr11	314676	325860

achapid	grch38/ chm13v2	alen	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aseq	cseq	chr	start	end
a0001c0001	1/0		399	29	2	14	0	8	4	IFITM3_chr11_314676_325860	IFITM3		ATGAA others(394): Show ATGAATCACACTGTCCAAACCTTCTTCTCTCCTGTCAACAGTGGCCAGCC CCCCAACTATGAGATGCTCAAGGAGGAGCACGAGGTGGCTGTGCTGGGGG CGCCCCACAACCCTGCTCCCCCGACGTCCACCGTGATCCACATCCGCAGC GAGACCTCCGTGCCCGACCATGTCGTCTGGTCCCTGTTCAACACCCTCTT CATGAACCCCTGCTGCCTGGGCTTCATAGCATTCGCCTACTCCGTGAAGT CTAGGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCC TCCACCGCCAAGTGCCTGAACATCTGGGCCCTGATTCTGGGCATCCTCAT GACCATTCTGCTCATCGTCATCCCAGTGCTGATCTTCCAGGCCTATGGA	chr11	314676	325860
a0001c0002	0/0		399	2	2	0	0	0	0	IFITM3_chr11_314676_325860	IFITM3		ATGAA others(394): Show ATGAATCACACTGTCCAAACCTTCTTCTCTCCTGTCAACAGCGGCCAGCC CCCCAACTATGAGATGCTCAAGGAGGAGCACGAGGTGGCTGTGCTGGGGG CGCCCCACAACCCTGCTCCCCCGACGTCCACCGTGATCCACATCCGCAGC GAGACCTCCGTGCCCGACCATGTCGTCTGGTCCCTGTTCAACACCCTCTT CATGAACCCCTGCTGCCTGGGCTTCATAGCATTCGCCTACTCCGTGAAGT CTAGGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCC TCCACCGCCAAGTGCCTGAACATCTGGGCCCTGATTCTGGGCATCCTCAT GACCATTCTGCTCATCGTCATCCCAGTGCTGATCTTCCAGGCCTATGGA	chr11	314676	325860

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	611	20	1	11	5	3	IFITM3_chr11_314676_325860	IFITM3	GAGAA others(606): Show GAGAACCATCCCAGTAACCCGACCACCGCTGGTCTTCGCTGGACACCATG AATCACACTGTCCAAACCTTCTTCTCTCCTGTCAACAGTGGCCAGCCCCC CAACTATGAGATGCTCAAGGAGGAGCACGAGGTGGCTGTGCTGGGGGCGC CCCACAACCCTGCTCCCCCGACGTCCACCGTGATCCACATCCGCAGCGAG ACCTCCGTGCCCGACCATGTCGTCTGGTCCCTGTTCAACACCCTCTTCAT GAACCCCTGCTGCCTGGGCTTCATAGCATTCGCCTACTCCGTGAAGTCTA GGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCCTCC ACCGCCAAGTGCCTGAACATCTGGGCCCTGATTCTGGGCATCCTCATGAC CATTCTGCTCATCGTCATCCCAGTGCTGATCTTCCAGGCCTATGGATAGA TCAGGAGGCATCACTGAGGCCAGGAGCTCTGCCCATGACCTGTATCCCAC GTACTCCAACTTCCATTCCTCGCCCTGCCCCCGGAGCCGAGTCCTGTATC AGCCCTTTATCCTCACACGCTTTTCTACAATGGCATTCAATAAAGTGCAC GTGTTTCTGGT	chr11	314676	325860
a0001c0001t0002	1/0	611	9	1	3	3	1	IFITM3_chr11_314676_325860	IFITM3	GAGAA others(606): Show GAGAACCATCCCAGTAACCCGACCGCCGCTGGTCTTCGCTGGACACCATG AATCACACTGTCCAAACCTTCTTCTCTCCTGTCAACAGTGGCCAGCCCCC CAACTATGAGATGCTCAAGGAGGAGCACGAGGTGGCTGTGCTGGGGGCGC CCCACAACCCTGCTCCCCCGACGTCCACCGTGATCCACATCCGCAGCGAG ACCTCCGTGCCCGACCATGTCGTCTGGTCCCTGTTCAACACCCTCTTCAT GAACCCCTGCTGCCTGGGCTTCATAGCATTCGCCTACTCCGTGAAGTCTA GGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCCTCC ACCGCCAAGTGCCTGAACATCTGGGCCCTGATTCTGGGCATCCTCATGAC CATTCTGCTCATCGTCATCCCAGTGCTGATCTTCCAGGCCTATGGATAGA TCAGGAGGCATCACTGAGGCCAGGAGCTCTGCCCATGACCTGTATCCCAC GTACTCCAACTTCCATTCCTCGCCCTGCCCCCGGAGCCGAGTCCTGTATC AGCCCTTTATCCTCACACGCTTTTCTACAATGGCATTCAATAAAGTGCAC GTGTTTCTGGT	chr11	314676	325860
a0001c0002t0002	0/0	611	2	2	0	0	0	IFITM3_chr11_314676_325860	IFITM3	GAGAA others(606): Show GAGAACCATCCCAGTAACCCGACCGCCGCTGGTCTTCGCTGGACACCATG AATCACACTGTCCAAACCTTCTTCTCTCCTGTCAACAGCGGCCAGCCCCC CAACTATGAGATGCTCAAGGAGGAGCACGAGGTGGCTGTGCTGGGGGCGC CCCACAACCCTGCTCCCCCGACGTCCACCGTGATCCACATCCGCAGCGAG ACCTCCGTGCCCGACCATGTCGTCTGGTCCCTGTTCAACACCCTCTTCAT GAACCCCTGCTGCCTGGGCTTCATAGCATTCGCCTACTCCGTGAAGTCTA GGGACAGGAAGATGGTTGGCGACGTGACCGGGGCCCAGGCCTATGCCTCC ACCGCCAAGTGCCTGAACATCTGGGCCCTGATTCTGGGCATCCTCATGAC CATTCTGCTCATCGTCATCCCAGTGCTGATCTTCCAGGCCTATGGATAGA TCAGGAGGCATCACTGAGGCCAGGAGCTCTGCCCATGACCTGTATCCCAC GTACTCCAACTTCCATTCCTCGCCCTGCCCCCGGAGCCGAGTCCTGTATC AGCCCTTTATCCTCACACGCTTTTCTACAATGGCATTCAATAAAGTGCAC GTGTTTCTGGT	chr11	314676	325860

actghapid	grch38/ chm13v2	total	AFR	AMR	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	19	1	11	5	2	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
a0001c0001t0001g0005	0/0	1	0	0	0	1	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
a0001c0001t0002g0002	1/0	6	0	2	3	0	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
a0001c0001t0002g0004	0/0	2	0	1	0	1	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
a0001c0001t0002g0006	0/0	1	1	0	0	0	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
a0001c0002t0002g0003	0/0	2	2	0	0	0	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG00099	hp2	a0001	c0001	t0002	g0002	EUR	GBR	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG00323	hp1	a0001	c0001	t0002	g0002	EUR	FIN	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG00323	hp2	a0001	c0001	t0001	g0001	EUR	FIN	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG00639	hp1	a0001	c0001	t0002	g0002	AMR	PUR	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG00639	hp2	a0001	c0001	t0001	g0001	AMR	PUR	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG00735	hp1	a0001	c0001	t0002	g0002	AMR	PUR	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG01074	hp2	a0001	c0001	t0001	g0001	AMR	PUR	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG01167	hp2	a0001	c0001	t0001	g0001	AMR	PUR	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG01261	hp1	a0001	c0001	t0002	g0004	AMR	CLM	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG01261	hp2	a0001	c0001	t0001	g0001	AMR	CLM	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG01361	hp2	a0001	c0001	t0001	g0001	AMR	CLM	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG01496	hp1	a0001	c0001	t0001	g0001	AMR	CLM	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG01516	hp2	a0001	c0001	t0002	g0002	EUR	IBS	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG01891	hp1	a0001	c0002	t0002	g0003	AFR	ACB	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG01891	hp2	a0001	c0001	t0001	g0001	AFR	ACB	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG03490	hp1	a0001	c0001	t0001	g0005	SAS	PJL	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG03490	hp2	a0001	c0001	t0002	g0004	SAS	PJL	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG03579	hp1	a0001	c0001	t0002	g0006	AFR	MSL	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG03579	hp2	a0001	c0002	t0002	g0003	AFR	MSL	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
HG04228	hp2	a0001	c0001	t0001	g0001	SAS	STU	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
NA20805	hp2	a0001	c0001	t0001	g0001	EUR	TSI	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860
homoSapiens	grch38p0	a0001	c0001	t0002	g0002	REF	REF	IFITM3_chr11_314676_325860	IFITM3	chr11	314676	325860

view	chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chr11:320772	A A	G G	1	a0001c0002 a0001c0002	2	HG01891.hp1 HG03579.hp2 HG01891.hp1 HG03579.hp2	synonymous_variant	LOW	c.42T>C c.42T>C	p.Ser14Ser p.Ser14Ser	IFITM3	ENSG00000142089.17	transcript	ENST00000399808.5	protein_coding	1/2	89/611	42/402	14/133			chr11	320772

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chr11:320836	C C	T T	1	a0001c0001t0001 a0001c0001t0001	20	HG00099.hp1 HG00323.hp2 HG00639.hp2 others(17): Show HG00099.hp1 HG00323.hp2 HG00639.hp2 HG00735.hp2 HG01074.hp1 HG01074.hp2 HG01167.hp1 HG01167.hp2 HG01261.hp2 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01496.hp2 HG01516.hp1 HG01891.hp2 HG03490.hp1 HG04228.hp1 HG04228.hp2 NA20805.hp1 NA20805.hp2	5_prime_UTR_variant	MODIFIER	c.-23G>A c.-23G>A		IFITM3	ENSG00000142089.17	transcript	ENST00000399808.5	protein_coding	1/2				23		chr11	320836

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chr11:320115	G G	A A	4	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0004 others(1): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0004 a0001c0001t0002g0006	23	HG00099.hp1 HG00323.hp2 HG00639.hp2 others(20): Show HG00099.hp1 HG00323.hp2 HG00639.hp2 HG00735.hp2 HG01074.hp1 HG01074.hp2 HG01167.hp1 HG01167.hp2 HG01261.hp1 HG01261.hp2 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01496.hp2 HG01516.hp1 HG01891.hp2 HG03490.hp1 HG03490.hp2 HG03579.hp1 HG04228.hp1 HG04228.hp2 NA20805.hp1 NA20805.hp2	intron_variant	MODIFIER	c.250-125C>T c.250-125C>T	IFITM3	ENSG00000142089.17	transcript	ENST00000399808.5	protein_coding	1/1	chr11	320115
chr11:320166	T T	C C	5	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0004 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0004 a0001c0001t0002g0006 a0001c0002t0002g0003	25	HG00099.hp1 HG00323.hp2 HG00639.hp2 others(22): Show HG00099.hp1 HG00323.hp2 HG00639.hp2 HG00735.hp2 HG01074.hp1 HG01074.hp2 HG01167.hp1 HG01167.hp2 HG01261.hp1 HG01261.hp2 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01496.hp2 HG01516.hp1 HG01891.hp1 HG01891.hp2 HG03490.hp1 HG03490.hp2 HG03579.hp1 HG03579.hp2 HG04228.hp1 HG04228.hp2 NA20805.hp1 NA20805.hp2	intron_variant	MODIFIER	c.250-176A>G c.250-176A>G	IFITM3	ENSG00000142089.17	transcript	ENST00000399808.5	protein_coding	1/1	chr11	320166
chr11:320237	C C	G G	4	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0004 others(1): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0004 a0001c0001t0002g0006	23	HG00099.hp1 HG00323.hp2 HG00639.hp2 others(20): Show HG00099.hp1 HG00323.hp2 HG00639.hp2 HG00735.hp2 HG01074.hp1 HG01074.hp2 HG01167.hp1 HG01167.hp2 HG01261.hp1 HG01261.hp2 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01496.hp2 HG01516.hp1 HG01891.hp2 HG03490.hp1 HG03490.hp2 HG03579.hp1 HG04228.hp1 HG04228.hp2 NA20805.hp1 NA20805.hp2	intron_variant	MODIFIER	c.250-247G>C c.250-247G>C	IFITM3	ENSG00000142089.17	transcript	ENST00000399808.5	protein_coding	1/1	chr11	320237
chr11:320363	A A	C C	1	a0001c0002t0002g0003 a0001c0002t0002g0003	2	HG01891.hp1 HG03579.hp2 HG01891.hp1 HG03579.hp2	intron_variant	MODIFIER	c.249+202T>G c.249+202T>G	IFITM3	ENSG00000142089.17	transcript	ENST00000399808.5	protein_coding	1/1	chr11	320363
chr11:320394	C C	T T	2	a0001c0001t0001g0001 a0001c0001t0002g0004 a0001c0001t0001g0001 a0001c0001t0002g0004	21	HG00099.hp1 HG00323.hp2 HG00639.hp2 others(18): Show HG00099.hp1 HG00323.hp2 HG00639.hp2 HG00735.hp2 HG01074.hp1 HG01074.hp2 HG01167.hp1 HG01167.hp2 HG01261.hp1 HG01261.hp2 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01496.hp2 HG01516.hp1 HG01891.hp2 HG03490.hp2 HG04228.hp1 HG04228.hp2 NA20805.hp1 NA20805.hp2	intron_variant	MODIFIER	c.249+171G>A c.249+171G>A	IFITM3	ENSG00000142089.17	transcript	ENST00000399808.5	protein_coding	1/1	chr11	320394

Search by Genic region

Search

JoGo Haplotype Explorer

IFITM3_chr11_314676_325860 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 1)

Coding Level Haplotype Info (Total: 2)

Transcript Level Haplotype Info (Total: 3)

Genebody Level Haplotype Info (Total: 6)

Haplotype Details by Sample (Haploid Level) (Total: 31)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 0)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 1)

Transcript Level Haplotype Variants (Exon) (Total: 1)

Genebody Level Haplotype Variants (Intron) (Total: 5)

Annotation (Repeats)

Annotation (SNP Array)