JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IFNA6_chr9_21345318_21355887	0/0	a0004	189	2	2	0	0	0	0	copy fasta	IFNA6	chr9	21345318	21355887
IFNA6_chr9_21345318_21355887	0/0	a0005	189	1	0	0	1	0	0	copy fasta	IFNA6	chr9	21345318	21355887
IFNA6_chr9_21345318_21355887	0/0	a0006	189	1	1	0	0	0	0	copy fasta	IFNA6	chr9	21345318	21355887
IFNA7_chr9_21196469_21207205	1/1	a0001	189	443	92	81	209	15	44	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	a0002	189	5	5	0	0	0	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	a0003	113	2	0	2	0	0	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	a0004	189	1	1	0	0	0	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	a0005	189	1	0	1	0	0	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	a0006	189	1	0	0	0	1	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	a0007	189	1	1	0	0	0	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	a0008	189	1	0	0	1	0	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA7_chr9_21196469_21207205	0/0	a0009	189	1	1	0	0	0	0	copy fasta	IFNA7	chr9	21196469	21207205
IFNA8_chr9_21404117_21415185	1/1	a0001	189	428	74	73	219	18	42	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	a0002	189	28	22	2	4	0	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	a0003	189	1	0	0	1	0	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNA8_chr9_21404117_21415185	0/0	a0004	189	1	0	1	0	0	0	copy fasta	IFNA8	chr9	21404117	21415185
IFNAR1_chr21_33319970_33364864	1/0	a0001	557	214	50	42	86	9	26	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	a0002	557	91	15	13	48	3	12	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR1_chr21_33319970_33364864	0/0	a0003	557	18	17	1	0	0	0	copy fasta	IFNAR1	chr21	33319970	33364864
IFNAR2_chr21_33224938_33270664	1/0	a0001	515	251	70	49	99	9	23	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/1	a0002	515	118	12	14	68	7	16	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	a0003	515	47	9	9	24	0	5	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	a0004	515	2	2	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	a0005	515	2	2	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	a0006	515	1	1	0	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	a0007	515	1	0	1	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	a0008	515	1	0	0	1	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNAR2_chr21_33224938_33270664	0/0	a0009	515	1	0	1	0	0	0	copy fasta	IFNAR2	chr21	33224938	33270664
IFNB1_chr9_21072104_21082942	1/1	a0001	187	444	89	70	222	18	43	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	a0002	187	5	0	0	5	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	a0003	187	4	4	0	0	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	a0004	187	2	2	0	0	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	a0005	187	1	0	0	0	0	1	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	a0006	187	1	1	0	0	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNB1_chr9_21072104_21082942	0/0	a0007	187	1	0	0	1	0	0	copy fasta	IFNB1	chr9	21072104	21082942
IFNE_chr9_21475839_21487313	1/1	a0001	208	363	86	65	161	15	34	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	a0002	70	61	9	5	41	0	6	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	a0003	208	23	1	10	4	1	7	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	a0004	208	1	0	0	0	0	1	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	a0005	208	1	1	0	0	0	0	copy fasta	IFNE	chr9	21475839	21487313
IFNE_chr9_21475839_21487313	0/0	a0006	208	1	1	0	0	0	0	copy fasta	IFNE	chr9	21475839	21487313
IFNGR1_chr6_137192485_137224385	1/1	a0001	489	347	77	74	153	12	29	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	a0002	489	32	4	1	12	0	15	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	a0003	489	5	0	0	5	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	a0004	498	2	2	0	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	a0005	489	1	0	1	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	a0006	489	1	1	0	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	a0007	489	1	1	0	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR1_chr6_137192485_137224385	0/0	a0008	489	1	1	0	0	0	0	copy fasta	IFNGR1	chr6	137192485	137224385
IFNGR2_chr21_33398413_33442516	1/1	a0001	337	242	52	50	94	14	30	copy fasta	IFNGR2	chr21	33398413	33442516