JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IFNGR2_chr21_33398413_33442516	0/0	a0002	337	121	27	19	59	4	12	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	a0003	337	12	12	0	0	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	a0004	337	3	3	0	0	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	a0005	337	2	0	0	2	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	a0006	337	1	1	0	0	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	a0007	337	1	0	0	1	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	a0008	337	1	0	1	0	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	a0009	337	1	0	0	1	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	a0010	337	1	0	0	1	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNGR2_chr21_33398413_33442516	0/0	a0011	333	1	1	0	0	0	0	copy fasta	IFNGR2	chr21	33398413	33442516
IFNG_chr12_68149768_68164740	1/1	a0001	166	422	96	78	190	12	44	copy fasta	IFNG	chr12	68149768	68164740
IFNK_chr9_27519290_27531498	0/1	a0001	207	404	61	80	201	14	47	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	1/0	a0002	207	24	20	2	0	0	1	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	a0003	15	8	5	1	0	0	2	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	a0004	207	8	7	1	0	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	a0005	207	2	2	0	0	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	a0006	207	1	0	0	1	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNK_chr9_27519290_27531498	0/0	a0007	207	1	1	0	0	0	0	copy fasta	IFNK	chr9	27519290	27531498
IFNL1_chr19_39291407_39303673	1/1	a0001	200	207	26	44	91	12	32	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	a0002	200	86	60	10	11	4	1	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	a0003	200	4	4	0	0	0	0	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	a0004	200	1	1	0	0	0	0	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	a0005	200	1	0	0	1	0	0	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	a0006	200	1	0	0	0	0	1	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	a0007	200	1	0	0	1	0	0	copy fasta	IFNL1	chr19	39291407	39303673
IFNL1_chr19_39291407_39303673	0/0	a0008	200	1	1	0	0	0	0	copy fasta	IFNL1	chr19	39291407	39303673
IFNL2_chr19_39263396_39275188	1/0	a0001	200	305	34	60	171	12	27	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/1	a0002	200	45	4	13	7	4	16	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	a0003	200	23	10	0	12	0	1	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	a0004	200	18	18	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	a0005	200	12	10	0	0	2	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	a0006	200	10	10	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	a0007	200	3	0	2	1	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	a0008	200	1	1	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	a0009	187	1	1	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	a0010	200	1	0	0	1	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	a0011	200	1	0	1	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	a0012	200	1	1	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL2_chr19_39263396_39275188	0/0	a0013	200	1	1	0	0	0	0	copy fasta	IFNL2	chr19	39263396	39275188
IFNL3_chr19_39238553_39250006	1/1	a0001	196	230	22	45	120	4	37	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0002	196	109	52	23	19	7	8	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0003	196	15	0	1	14	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0004	196	12	0	10	2	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0005	196	7	7	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0006	196	3	3	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0007	196	2	2	0	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0008	196	2	0	0	0	0	2	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0009	196	1	0	0	0	1	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0010	196	1	0	1	0	0	0	copy fasta	IFNL3	chr19	39238553	39250006
IFNL3_chr19_39238553_39250006	0/0	a0011	196	1	0	0	1	0	0	copy fasta	IFNL3	chr19	39238553	39250006