Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALPK1_chr4_112292369_112447621	0/0	a0006	1244	3	1	2	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0007	1244	2	2	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0008	1244	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0009	1244	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0010	1244	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0011	594	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0012	1244	1	0	0	1	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0013	1244	1	0	1	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0014	1244	1	0	0	1	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0015	1244	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0016	1244	1	0	0	1	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0017	1244	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0018	1244	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0019	1244	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0020	1244	1	0	0	1	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0021	1244	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0022	1244	1	0	0	0	0	1	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	a0023	1244	1	0	0	1	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK2_chr18_58476247_58634091	0/0	a0001	2170	50	1	5	35	2	7	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0002	2165	43	3	8	29	1	2	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0003	2170	39	1	3	31	0	4	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0004	2165	32	2	8	11	5	6	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0005	2170	13	1	6	4	1	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0006	2170	11	5	3	1	0	2	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0007	2170	7	6	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0008	2170	7	5	0	2	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0009	2170	6	3	1	2	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0010	2170	6	0	0	5	0	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0011	2165	6	5	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0012	2165	6	6	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0013	2165	5	1	3	0	1	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0014	2169	5	0	3	0	0	2	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0015	2165	4	0	2	0	1	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0016	2165	4	3	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0017	2165	4	4	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0018	2170	3	0	3	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0019	2170	3	3	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0020	2165	3	3	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0021	2170	3	3	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0022	2165	3	2	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0023	2169	3	0	2	1	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0024	2165	3	3	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0025	2170	2	1	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0026	2165	2	0	1	0	0	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0027	2170	2	1	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0028	2165	2	1	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0029	2170	2	0	0	1	0	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0030	2165	2	2	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/1	a0031	2170	2	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0032	2165	2	2	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091