JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IFT27_chr22_36753211_36781119	0/0	a0003	186	2	2	0	0	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	a0004	186	1	0	1	0	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	a0005	186	1	0	0	1	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT27_chr22_36753211_36781119	0/0	a0006	130	1	1	0	0	0	0	copy fasta	IFT27	chr22	36753211	36781119
IFT43_chr14_75980763_76088742	1/1	a0001	208	392	92	76	168	12	42	copy fasta	IFT43	chr14	75980763	76088742
IFT43_chr14_75980763_76088742	0/0	a0002	208	4	0	0	4	0	0	copy fasta	IFT43	chr14	75980763	76088742
IFT46_chr11_118539543_118570931	1/1	a0001	304	265	69	60	99	9	26	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	a0002	304	107	14	3	74	1	15	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	a0003	303	5	3	2	0	0	0	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	a0004	304	1	0	1	0	0	0	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	a0005	304	1	0	0	1	0	0	copy fasta	IFT46	chr11	118539543	118570931
IFT46_chr11_118539543_118570931	0/0	a0006	304	1	0	0	0	0	1	copy fasta	IFT46	chr11	118539543	118570931
IFT52_chr20_43585937_43652299	1/1	a0001	437	295	77	64	106	10	36	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	0/0	a0002	437	1	1	0	0	0	0	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	0/0	a0003	437	1	0	0	1	0	0	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	0/0	a0004	437	1	1	0	0	0	0	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	0/0	a0005	437	1	0	0	1	0	0	copy fasta	IFT52	chr20	43585937	43652299
IFT52_chr20_43585937_43652299	0/0	a0006	437	1	1	0	0	0	0	copy fasta	IFT52	chr20	43585937	43652299
IFT56_chr7_139128778_139196986	1/1	a0001	554	327	88	40	151	8	38	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	a0002	554	2	0	0	2	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT56_chr7_139128778_139196986	0/0	a0003	554	1	0	0	1	0	0	copy fasta	IFT56	chr7	139128778	139196986
IFT57_chr3_108155812_108227424	1/1	a0001	429	350	81	65	157	8	37	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	a0002	429	2	0	1	0	0	1	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	a0003	429	1	0	0	1	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT57_chr3_108155812_108227424	0/0	a0004	429	1	1	0	0	0	0	copy fasta	IFT57	chr3	108155812	108227424
IFT70A_chr2_177607999_177623742	0/0	a0001	665	322	73	39	170	7	33	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	1/0	a0002	665	30	17	7	1	0	4	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	a0003	665	18	0	12	0	5	1	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	a0004	665	5	4	0	0	0	1	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	a0005	665	3	0	0	3	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	a0006	665	2	2	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	a0007	665	1	0	1	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/1	a0008	665	1	0	0	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	a0009	665	1	0	0	0	0	1	copy fasta	IFT70A	chr2	177607999	177623742
IFT70A_chr2_177607999_177623742	0/0	a0010	665	1	0	1	0	0	0	copy fasta	IFT70A	chr2	177607999	177623742
IFT70B_chr2_177543998_177557796	0/1	a0001	665	332	70	54	172	7	28	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	1/0	a0002	665	33	19	8	0	0	5	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	a0003	665	2	2	0	0	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	a0004	665	2	2	0	0	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	a0005	665	2	0	0	2	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	a0006	665	2	0	0	2	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	a0007	665	2	0	0	2	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	a0008	665	2	0	0	2	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	a0009	665	1	1	0	0	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	a0010	665	1	0	0	0	0	1	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	a0011	665	1	0	0	1	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	a0012	665	1	0	0	1	0	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT70B_chr2_177543998_177557796	0/0	a0013	665	1	0	0	0	1	0	copy fasta	IFT70B	chr2	177543998	177557796
IFT74_chr9_26951412_27071134	1/1	a0001	600	200	66	37	60	9	26	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	a0002	600	64	1	15	45	0	3	copy fasta	IFT74	chr9	26951412	27071134