JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IFT74_chr9_26951412_27071134	0/0	a0003	600	25	8	3	11	0	3	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	a0004	600	14	2	2	3	0	7	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	a0005	600	14	0	4	5	1	4	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	a0006	600	13	5	3	0	2	3	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	a0007	600	7	5	2	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	a0008	600	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	a0009	600	1	0	1	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	a0010	600	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	a0011	600	1	1	0	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT74_chr9_26951412_27071134	0/0	a0012	600	1	0	1	0	0	0	copy fasta	IFT74	chr9	26951412	27071134
IFT80_chr3_160251986_160404225	1/1	a0001	777	120	37	25	30	8	18	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	a0002	777	88	51	14	11	4	8	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	a0003	777	2	1	1	0	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	a0004	777	1	1	0	0	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT80_chr3_160251986_160404225	0/0	a0005	777	1	0	0	1	0	0	copy fasta	IFT80	chr3	160251986	160404225
IFT81_chr12_110119357_110223793	1/1	a0001	676	206	78	49	44	12	21	copy fasta	IFT81	chr12	110119357	110223793
IFT81_chr12_110119357_110223793	0/0	a0002	676	9	6	3	0	0	0	copy fasta	IFT81	chr12	110119357	110223793
IFT81_chr12_110119357_110223793	0/0	a0003	676	2	0	0	0	0	2	copy fasta	IFT81	chr12	110119357	110223793
IFT81_chr12_110119357_110223793	0/0	a0004	676	1	0	0	0	0	1	copy fasta	IFT81	chr12	110119357	110223793
IFT88_chr13_20562157_20696444	0/1	a0001	824	223	38	31	114	10	29	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	1/0	a0002	824	35	21	9	0	4	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	a0003	824	28	18	6	0	2	2	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	a0004	824	7	6	1	0	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	a0005	824	5	0	0	1	0	4	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	a0006	824	3	3	0	0	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	a0007	824	3	1	2	0	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	a0008	824	1	1	0	0	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	a0009	824	1	0	1	0	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	a0010	824	1	0	0	0	0	1	copy fasta	IFT88	chr13	20562157	20696444
IFT88_chr13_20562157_20696444	0/0	a0011	824	1	0	0	1	0	0	copy fasta	IFT88	chr13	20562157	20696444
IFTAP_chr11_36589502_36664272	1/1	a0001	221	351	89	67	150	12	31	copy fasta	IFTAP	chr11	36589502	36664272
IFTAP_chr11_36589502_36664272	0/0	a0002	221	4	4	0	0	0	0	copy fasta	IFTAP	chr11	36589502	36664272
IFTAP_chr11_36589502_36664272	0/0	a0003	221	1	1	0	0	0	0	copy fasta	IFTAP	chr11	36589502	36664272
IFTAP_chr11_36589502_36664272	0/0	a0004	221	1	0	1	0	0	0	copy fasta	IFTAP	chr11	36589502	36664272
IFTAP_chr11_36589502_36664272	0/0	a0005	221	1	0	0	0	0	1	copy fasta	IFTAP	chr11	36589502	36664272
IGBP1C_chr17_58655424_58697045	1/1	a0001	340	367	96	69	144	16	40	copy fasta	IGBP1C	chr17	58655424	58697045
IGBP1C_chr17_58655424_58697045	0/0	a0002	340	1	0	1	0	0	0	copy fasta	IGBP1C	chr17	58655424	58697045
IGBP1_chrX_70128447_70171324	1/1	a0001	339	229	64	45	81	11	26	copy fasta	IGBP1	chrX	70128447	70171324
IGBP1_chrX_70128447_70171324	0/0	a0002	339	14	14	0	0	0	0	copy fasta	IGBP1	chrX	70128447	70171324
IGBP1_chrX_70128447_70171324	0/0	a0003	98	1	0	0	1	0	0	copy fasta	IGBP1	chrX	70128447	70171324
IGBP1_chrX_70128447_70171324	0/0	a0004	339	1	1	0	0	0	0	copy fasta	IGBP1	chrX	70128447	70171324
IGDCC3_chr15_65322127_65383002	0/1	a0001	814	176	25	34	81	8	27	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	1/0	a0002	814	125	52	36	25	6	5	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	a0003	814	3	3	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	a0004	814	3	0	0	3	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	a0005	814	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	a0006	814	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	a0007	814	1	0	0	0	0	1	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	a0008	814	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	a0009	814	1	1	0	0	0	0	copy fasta	IGDCC3	chr15	65322127	65383002