JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IGDCC3_chr15_65322127_65383002	0/0	a0010	814	1	0	0	1	0	0	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC3_chr15_65322127_65383002	0/0	a0011	814	1	0	0	0	0	1	copy fasta	IGDCC3	chr15	65322127	65383002
IGDCC4_chr15_65376484_65427947	1/1	a0001	1250	129	39	16	47	7	18	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0002	1250	77	6	8	58	0	5	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0003	1250	59	12	12	29	1	5	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0004	1250	22	12	4	4	0	2	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0005	1250	14	4	5	5	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0006	1250	11	5	3	1	0	2	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0007	1250	6	1	2	3	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0008	1250	5	5	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0009	1250	4	0	0	1	0	3	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0010	1250	2	2	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0011	1250	2	0	2	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0012	1250	2	2	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0013	1250	2	0	2	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0014	1250	2	2	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0015	1250	2	0	0	0	0	2	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0016	1250	2	1	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0017	1250	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0018	1250	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0019	1250	1	0	0	1	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0020	1250	1	0	1	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0021	1250	1	0	0	0	0	1	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0022	1250	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0023	1250	1	0	1	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0024	1250	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0025	1250	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0026	1250	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGDCC4_chr15_65376484_65427947	0/0	a0027	1250	1	1	0	0	0	0	copy fasta	IGDCC4	chr15	65376484	65427947
IGF1R_chr15_98643539_98969530	0/0	a0000	0	1	0	1	0	0	0	copy fasta	IGF1R	chr15	98643539	98969530
IGF1R_chr15_98643539_98969530	1/1	a0001	1367	209	80	43	54	6	24	copy fasta	IGF1R	chr15	98643539	98969530
IGF1_chr12_102390874_102485563	1/1	a0001	153	359	83	68	158	14	34	copy fasta	IGF1	chr12	102390874	102485563
IGF1_chr12_102390874_102485563	0/0	a0002	153	1	1	0	0	0	0	copy fasta	IGF1	chr12	102390874	102485563
IGF2BP1_chr17_48992385_49061145	1/1	a0001	577	316	92	69	110	10	33	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	a0002	577	1	0	0	0	0	1	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP1_chr17_48992385_49061145	0/0	a0003	577	1	0	1	0	0	0	copy fasta	IGF2BP1	chr17	48992385	49061145
IGF2BP2_chr3_185638130_185830042	1/1	a0001	599	214	83	43	52	6	28	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	a0002	599	1	0	1	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP2_chr3_185638130_185830042	0/0	a0003	599	1	1	0	0	0	0	copy fasta	IGF2BP2	chr3	185638130	185830042
IGF2BP3_chr7_23305209_23475491	1/1	a0001	579	230	86	48	56	10	28	copy fasta	IGF2BP3	chr7	23305209	23475491
IGF2R_chr6_159964082_160116504	0/1	a0001	2491	148	35	31	47	12	22	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0002	2491	47	0	9	36	0	2	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0003	2491	23	11	0	7	0	5	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0004	2491	18	0	1	11	0	6	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	1/0	a0005	2491	14	1	9	1	1	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0006	2491	7	7	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0007	2491	5	5	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0008	2491	5	5	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0009	2491	4	4	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0010	2491	3	3	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504