JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IGF2R_chr6_159964082_160116504	0/0	a0011	2491	3	0	0	3	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0012	2491	2	1	1	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0013	2491	2	2	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0014	2491	2	2	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0015	2491	2	2	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0016	2491	2	0	2	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0017	2491	2	0	0	0	1	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0018	2491	2	2	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0019	2491	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0020	2491	1	0	0	0	0	1	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0021	2491	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0022	2491	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0023	2491	1	0	1	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0024	2491	1	0	1	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0025	2491	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0026	2491	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0027	2491	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0028	2491	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0029	2491	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0030	2491	1	0	1	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0031	2491	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0032	2491	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0033	2491	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0034	2491	1	0	0	1	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0035	2491	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0036	2491	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2R_chr6_159964082_160116504	0/0	a0037	2491	1	1	0	0	0	0	copy fasta	IGF2R	chr6	159964082	160116504
IGF2_chr11_2124117_2144389	1/1	a0001	180	382	91	75	158	18	38	copy fasta	IGF2	chr11	2124117	2144389
IGF2_chr11_2124117_2144389	0/0	a0002	180	6	5	1	0	0	0	copy fasta	IGF2	chr11	2124117	2144389
IGFALS_chr16_1785413_1798705	1/1	a0001	605	399	67	75	193	16	46	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0002	605	25	23	1	0	0	1	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0003	605	9	0	0	9	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0004	605	4	0	0	4	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0005	605	2	0	0	0	0	2	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0006	605	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0007	605	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0008	605	1	0	1	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0009	605	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0010	605	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0011	605	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0012	605	1	0	0	0	0	1	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0013	605	1	0	1	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0014	552	1	0	0	1	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0015	605	1	1	0	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0016	605	1	1	0	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0017	605	1	1	0	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFALS_chr16_1785413_1798705	0/0	a0018	605	1	1	0	0	0	0	copy fasta	IGFALS	chr16	1785413	1798705
IGFBP1_chr7_45883488_45898660	1/0	a0001	259	255	52	48	112	10	32	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/1	a0002	259	184	39	30	96	6	12	copy fasta	IGFBP1	chr7	45883488	45898660
IGFBP1_chr7_45883488_45898660	0/0	a0003	259	3	3	0	0	0	0	copy fasta	IGFBP1	chr7	45883488	45898660