JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IGFN1_chr1_201185824_201233952	0/0	a0095	2113	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0096	3816	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0097	3816	1	0	0	0	1	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0098	3816	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0099	3816	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0100	3816	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0101	3744	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0102	3744	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0103	3744	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0104	3744	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0105	3744	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0106	3852	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0107	3780	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0108	3816	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0109	3996	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0110	3816	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0111	3816	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0112	3816	1	0	0	0	0	1	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0113	3816	1	0	1	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0114	3816	1	0	0	1	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGFN1_chr1_201185824_201233952	0/0	a0115	3816	1	1	0	0	0	0	copy fasta	IGFN1	chr1	201185824	201233952
IGHMBP2_chr11_68898891_68945601	1/0	a0001	993	130	34	11	71	3	10	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0002	993	83	7	21	37	2	16	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/1	a0003	993	48	1	9	28	3	6	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0004	993	37	9	14	5	6	3	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0005	993	30	21	3	5	0	1	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0006	993	16	0	1	15	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0007	993	7	6	0	0	0	1	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0008	993	4	0	2	0	0	2	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0009	993	3	3	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0010	993	2	2	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0011	993	2	2	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0012	993	2	2	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0013	993	1	0	1	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0014	993	1	0	0	0	1	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0015	993	1	1	0	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0016	993	1	0	1	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0017	993	1	0	0	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0018	993	1	0	0	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0019	993	1	0	0	0	0	1	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0020	993	1	0	0	1	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0021	993	1	0	0	0	1	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGHMBP2_chr11_68898891_68945601	0/0	a0022	993	1	0	1	0	0	0	copy fasta	IGHMBP2	chr11	68898891	68945601
IGIP_chr5_140120937_140134392	1/1	a0001	53	309	73	62	112	14	46	copy fasta	IGIP	chr5	140120937	140134392
IGIP_chr5_140120937_140134392	0/0	a0002	53	3	3	0	0	0	0	copy fasta	IGIP	chr5	140120937	140134392
IGIP_chr5_140120937_140134392	0/0	a0003	53	2	0	2	0	0	0	copy fasta	IGIP	chr5	140120937	140134392
IGLL1_chr22_23568125_23585290	1/1	a0001	213	315	54	61	153	13	32	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0002	213	71	0	14	49	2	6	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0003	213	16	10	2	0	1	3	copy fasta	IGLL1	chr22	23568125	23585290
IGLL1_chr22_23568125_23585290	0/0	a0004	213	15	14	1	0	0	0	copy fasta	IGLL1	chr22	23568125	23585290