JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IGSF10_chr3_151431203_151466061	0/0	a0013	2623	3	1	2	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0014	2623	2	0	1	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0015	2623	2	2	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0016	2623	2	2	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0017	2623	2	0	0	1	1	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0018	2623	2	1	1	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0019	2623	2	1	1	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0020	2623	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0021	2623	1	0	0	0	1	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0022	2623	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0023	2623	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0024	2623	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0025	2623	1	0	0	0	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0026	2623	1	0	0	0	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0027	2623	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0028	2623	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0029	2623	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0030	2623	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0031	2623	1	0	0	0	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0032	2623	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0033	2623	1	0	0	1	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0034	2623	1	0	0	0	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0035	2623	1	0	0	0	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0036	2623	1	0	0	0	0	1	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0037	2623	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0038	2623	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0039	1720	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0040	2623	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0041	2623	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF10_chr3_151431203_151466061	0/0	a0042	2623	1	1	0	0	0	0	copy fasta	IGSF10	chr3	151431203	151466061
IGSF11_chr3_118895557_119039846	0/1	a0001	431	225	57	40	93	9	25	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	a0002	431	95	27	21	30	3	14	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	1/0	a0003	431	39	0	2	25	4	7	copy fasta	IGSF11	chr3	118895557	119039846
IGSF11_chr3_118895557_119039846	0/0	a0004	431	1	0	1	0	0	0	copy fasta	IGSF11	chr3	118895557	119039846
IGSF1_chrX_131268506_131294306	1/1	a0001	1336	302	78	54	122	12	34	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	a0002	1336	14	0	0	14	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	a0003	1336	2	0	0	2	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	a0004	1336	2	0	0	2	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	a0005	1336	1	0	1	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	a0006	381	1	0	0	1	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	a0007	960	1	0	0	1	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	a0008	1336	1	0	0	0	1	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	a0009	1336	1	1	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	a0010	1336	1	1	0	0	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	a0011	1058	1	0	0	1	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF1_chrX_131268506_131294306	0/0	a0012	945	1	0	0	1	0	0	copy fasta	IGSF1	chrX	131268506	131294306
IGSF21_chr1_18102798_18383483	1/1	a0001	467	225	68	56	59	10	30	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	a0002	467	11	9	1	1	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	a0003	467	9	6	3	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	a0004	467	1	1	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483