Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALPK2_chr18_58476247_58634091	0/0	a0033	2165	2	2	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0034	2170	2	2	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0035	2165	2	2	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0036	2169	1	0	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	1/0	a0037	2170	1	0	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0038	2165	1	0	0	0	1	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0039	2170	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0040	2169	1	0	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0041	2165	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0042	2169	1	0	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0043	2170	1	0	0	1	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0044	2046	1	0	0	1	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0045	2170	1	0	0	1	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0046	2170	1	0	0	1	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0047	2170	1	0	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0048	2165	1	0	0	1	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0049	2170	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0050	2165	1	0	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0051	2170	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0052	2165	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0053	2170	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0054	2165	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0055	2165	1	0	0	0	0	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0056	2165	1	0	0	0	0	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0057	2169	1	0	0	0	0	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0058	2170	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0059	2170	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0060	2170	1	0	0	0	0	1	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0061	2165	1	0	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0062	2165	1	1	0	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0063	2165	1	0	1	0	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK2_chr18_58476247_58634091	0/0	a0064	2165	1	0	0	1	0	0	copy fasta	ALPK2	chr18	58476247	58634091
ALPK3_chr15_84812356_84878479	0/1	a0001	1705	179	57	18	86	2	15	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	1/0	a0002	1705	64	4	21	24	2	12	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0003	1705	24	1	13	8	0	2	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0004	1705	12	0	0	12	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0005	1705	10	10	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0006	1705	6	0	5	0	0	1	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0007	1705	6	3	1	2	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0008	1705	5	0	2	3	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0009	1705	4	4	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0010	1705	4	3	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0011	1705	3	2	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0012	1705	2	0	0	0	0	2	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0013	1705	2	2	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0014	1705	2	0	0	2	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0015	1705	2	0	1	0	0	1	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0016	1705	1	0	0	1	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0017	1705	1	0	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0018	1705	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479