JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IGSF21_chr1_18102798_18383483	0/0	a0005	467	1	1	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF21_chr1_18102798_18383483	0/0	a0006	467	1	1	0	0	0	0	copy fasta	IGSF21	chr1	18102798	18383483
IGSF22_chr11_18699312_18731188	0/0	a0001	1326	189	30	20	113	5	21	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0002	1326	55	2	10	29	1	13	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/1	a0003	1326	40	0	11	26	2	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0004	1326	19	12	1	5	1	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0005	1326	18	14	4	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0006	1326	18	2	11	1	2	2	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0007	1326	17	2	6	7	0	2	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0008	1326	14	0	0	14	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0009	1326	13	3	3	4	2	1	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0010	1326	10	9	1	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0011	1326	6	0	2	0	3	1	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0012	1326	5	0	5	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0013	1326	5	5	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0014	1326	4	2	1	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0015	1326	3	0	0	3	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0016	1326	2	2	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0017	1326	2	0	0	0	2	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0018	1326	2	0	0	0	0	2	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0019	1326	2	0	0	2	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0020	1326	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0021	1326	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0022	1326	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0023	1326	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0024	1326	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0025	1326	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0026	1326	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0027	1326	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0028	1326	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0029	1326	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0030	1326	1	0	0	0	0	1	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0031	1326	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	1/0	a0032	1326	1	0	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0033	1326	1	0	1	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0034	1326	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0035	1326	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0036	1326	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0037	1326	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0038	1326	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0039	1326	1	0	1	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0040	1326	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0041	1326	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0042	1326	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0043	1326	1	0	0	0	0	1	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0044	1326	1	1	0	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0045	1326	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0046	1326	1	0	1	0	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF22_chr11_18699312_18731188	0/0	a0047	1326	1	0	0	1	0	0	copy fasta	IGSF22	chr11	18699312	18731188
IGSF23_chr19_44608563_44641781	1/1	a0001	192	421	91	80	192	14	42	copy fasta	IGSF23	chr19	44608563	44641781