JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IGSF23_chr19_44608563_44641781	0/0	a0002	192	1	1	0	0	0	0	copy fasta	IGSF23	chr19	44608563	44641781
IGSF3_chr1_116569408_116672733	0/0	a0001	1194	99	33	10	44	1	11	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	1/0	a0002	1194	88	35	17	22	5	8	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/1	a0003	1195	58	11	18	10	5	13	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	a0004	1194	4	1	1	2	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	a0005	1194	3	0	2	0	1	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	a0006	1194	1	0	0	0	1	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	a0007	1194	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	a0008	1195	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	a0009	1195	1	0	1	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	a0010	1194	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	a0011	1194	1	0	0	1	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	a0012	1195	1	0	0	1	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	a0013	1195	1	0	0	0	0	1	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	a0014	1194	1	0	0	0	0	1	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	a0015	1194	1	0	0	0	1	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	a0016	1194	1	0	1	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF3_chr1_116569408_116672733	0/0	a0017	1194	1	1	0	0	0	0	copy fasta	IGSF3	chr1	116569408	116672733
IGSF5_chr21_39740183_39807081	0/0	a0001	407	100	9	17	60	4	10	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0002	407	88	9	22	39	4	14	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	1/0	a0003	407	54	23	8	11	3	8	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0004	407	45	8	8	27	0	2	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0005	407	14	13	1	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0006	407	13	10	3	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0007	407	10	0	0	9	0	1	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0008	407	8	6	0	2	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0009	407	5	5	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0010	17	2	0	1	0	1	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0011	407	2	2	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0012	407	1	0	0	1	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0013	407	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/1	a0014	407	1	0	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0015	407	1	0	1	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0016	407	1	0	1	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0017	407	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0018	407	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0019	407	1	0	0	0	0	1	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0020	407	1	0	0	1	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0021	407	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF5_chr21_39740183_39807081	0/0	a0022	407	1	1	0	0	0	0	copy fasta	IGSF5	chr21	39740183	39807081
IGSF6_chr16_21634550_21657608	1/1	a0001	241	406	78	75	194	14	43	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	a0002	241	1	0	1	0	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	a0003	241	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	a0004	241	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	a0005	241	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	a0006	241	1	0	0	1	0	0	copy fasta	IGSF6	chr16	21634550	21657608
IGSF6_chr16_21634550_21657608	0/0	a0007	241	1	0	0	0	0	1	copy fasta	IGSF6	chr16	21634550	21657608
IGSF8_chr1_160086343_160103619	1/1	a0001	613	404	90	78	184	10	40	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	a0002	613	4	4	0	0	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	a0003	613	2	0	0	0	2	0	copy fasta	IGSF8	chr1	160086343	160103619