JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IGSF8_chr1_160086343_160103619	0/0	a0004	613	1	0	0	1	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	a0005	613	1	0	0	0	1	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	a0006	613	1	0	0	1	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	a0007	482	1	0	0	0	1	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	a0008	613	1	0	0	1	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF8_chr1_160086343_160103619	0/0	a0009	613	1	0	0	1	0	0	copy fasta	IGSF8	chr1	160086343	160103619
IGSF9B_chr11_133891438_133961968	1/1	a0001	1437	338	82	74	124	15	41	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	a0002	1437	7	1	6	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	a0003	1437	6	6	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	a0004	1437	2	0	0	2	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	a0005	1437	2	2	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	a0006	1437	2	0	0	0	1	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	a0007	1437	2	0	0	2	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	a0008	1437	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	a0009	1437	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	a0010	1437	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9_chr1_159922041_159950613	1/1	a0001	1179	306	77	50	121	16	40	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0002	1179	51	0	6	40	0	5	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0003	1179	26	0	16	10	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0004	1179	23	4	3	16	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0005	1179	4	3	1	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0006	1179	2	2	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0007	1179	2	2	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0008	1179	1	0	0	1	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0009	1179	1	0	1	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0010	1179	1	0	0	1	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0011	1179	1	0	0	0	0	1	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0012	1179	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0013	1175	1	0	0	1	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0014	1179	1	0	1	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0015	1179	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0016	1179	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	a0017	1179	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IHH_chr2_219049424_219065921	1/1	a0001	411	386	81	60	195	12	36	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	a0002	411	7	7	0	0	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	a0003	411	2	2	0	0	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	a0004	411	1	0	0	1	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	a0005	411	1	0	0	1	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	a0006	411	1	0	0	1	0	0	copy fasta	IHH	chr2	219049424	219065921
IHO1_chr3_49194498_49263106	0/0	a0001	594	167	79	36	24	15	13	copy fasta	IHO1	chr3	49194498	49263106
IHO1_chr3_49194498_49263106	0/0	a0002	594	27	4	4	14	2	3	copy fasta	IHO1	chr3	49194498	49263106
IHO1_chr3_49194498_49263106	0/0	a0003	594	1	1	0	0	0	0	copy fasta	IHO1	chr3	49194498	49263106
IHO1_chr3_49194498_49263106	0/0	a0004	594	1	0	0	0	1	0	copy fasta	IHO1	chr3	49194498	49263106
IKBIP_chr12_98619249_98649788	1/1	a0001	377	398	84	67	183	16	46	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	a0002	377	8	7	1	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	a0003	377	2	2	0	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	a0004	377	2	1	1	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	a0005	377	1	0	0	1	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	a0006	377	1	0	1	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	a0007	377	1	0	0	1	0	0	copy fasta	IKBIP	chr12	98619249	98649788