JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IKBIP_chr12_98619249_98649788	0/0	a0008	377	1	0	0	1	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBKB_chr8_42266302_42337460	1/1	a0001	756	262	84	44	96	8	28	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	a0002	756	9	0	0	9	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	a0003	756	5	5	0	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	a0004	756	1	1	0	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	a0005	756	1	0	0	1	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKE_chr1_206465476_206501889	1/0	a0001	716	253	62	46	104	13	27	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	a0002	716	115	29	5	72	0	9	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/1	a0003	716	44	2	12	19	5	5	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	a0004	716	31	0	18	13	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	a0005	716	9	2	4	0	0	3	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	a0006	716	3	3	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	a0007	716	2	0	0	2	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	a0008	716	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	a0009	716	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	a0010	716	1	0	1	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKG_chrX_154542620_154570033	1/1	a0001	419	237	74	42	83	6	30	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	a0002	419	4	0	4	0	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	a0003	186	1	0	0	1	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	a0004	419	1	0	0	1	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	a0005	145	1	0	0	1	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	a0006	135	1	0	0	1	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	a0007	11	1	0	0	1	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKZF1_chr7_50299716_50410101	1/1	a0001	519	286	66	50	126	12	30	copy fasta	IKZF1	chr7	50299716	50410101
IKZF2_chr2_212994698_213156612	1/1	a0001	526	250	80	45	83	8	32	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	a0002	526	2	1	1	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	a0003	526	2	1	0	1	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF3_chr17_39752718_39869312	1/1	a0001	509	248	78	43	91	7	27	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	a0002	509	6	0	3	0	3	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	a0003	509	1	0	0	1	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	a0004	509	1	0	0	0	0	1	copy fasta	IKZF3	chr17	39752718	39869312
IKZF4_chr12_56016043_56043435	1/1	a0001	585	326	80	65	145	10	24	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	a0002	585	1	0	0	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	a0003	585	1	0	1	0	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	a0004	585	1	0	0	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	a0005	585	1	0	0	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF5_chr10_122985807_123013795	1/1	a0001	419	397	91	72	172	16	44	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	a0002	419	5	0	0	5	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	a0003	419	1	1	0	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	a0004	419	1	0	0	1	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IK_chr5_140642829_140667480	1/1	a0001	557	375	93	52	173	15	40	copy fasta	IK	chr5	140642829	140667480
IK_chr5_140642829_140667480	0/0	a0002	557	3	1	2	0	0	0	copy fasta	IK	chr5	140642829	140667480
IK_chr5_140642829_140667480	0/0	a0003	472	1	0	0	1	0	0	copy fasta	IK	chr5	140642829	140667480
IK_chr5_140642829_140667480	0/0	a0004	557	1	0	0	0	1	0	copy fasta	IK	chr5	140642829	140667480
IL10RA_chr11_117981394_118006483	0/1	a0001	578	254	63	47	110	5	28	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	a0002	578	86	1	5	72	3	5	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	1/0	a0003	578	33	17	10	0	2	3	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	a0004	578	19	1	6	0	5	7	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	a0005	578	7	1	4	0	1	1	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	a0006	578	7	0	0	7	0	0	copy fasta	IL10RA	chr11	117981394	118006483