JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IL10RA_chr11_117981394_118006483	0/0	a0007	578	6	3	1	2	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	a0008	578	5	5	0	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	a0009	578	2	2	0	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	a0010	578	2	0	0	2	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	a0011	578	1	0	0	1	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	a0012	578	1	0	0	1	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	a0013	582	1	0	0	1	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	a0014	578	1	1	0	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	a0015	578	1	0	1	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RB_chr21_33261367_33302221	1/1	a0001	325	263	94	38	87	14	28	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	a0002	325	156	4	37	91	4	20	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	a0003	325	3	2	1	0	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	a0004	325	2	0	0	2	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	a0005	325	1	0	0	1	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	a0006	325	1	0	0	1	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10_chr1_206762602_206777494	1/1	a0001	178	452	100	78	214	16	42	copy fasta	IL10	chr1	206762602	206777494
IL11RA_chr9_34647185_34666902	1/1	a0001	422	370	91	72	143	12	50	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	a0002	422	3	0	0	3	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	a0003	422	3	0	0	3	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	a0004	422	2	0	0	2	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	a0005	422	2	0	2	0	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	a0006	422	2	2	0	0	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	a0007	422	1	1	0	0	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	a0008	422	1	0	0	1	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11_chr19_55359382_55375463	1/1	a0001	199	348	97	67	127	12	43	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	a0002	199	2	0	1	0	0	1	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	a0003	199	1	0	0	1	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	a0004	199	1	1	0	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL12A_chr3_159983835_160001019	1/1	a0001	219	424	90	83	187	16	46	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	a0002	219	5	4	1	0	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	a0003	219	1	1	0	0	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	a0004	219	1	0	0	1	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	a0005	219	1	1	0	0	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12B_chr5_159309780_159335487	1/1	a0001	328	378	89	66	173	15	33	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	a0002	328	6	0	0	6	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	a0003	328	2	0	0	0	1	1	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	a0004	326	2	0	0	2	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	a0005	328	1	0	0	0	0	1	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	a0006	328	1	0	0	0	0	1	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	a0007	328	1	0	0	1	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	a0008	328	1	1	0	0	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12RB1_chr19_18053995_18091934	1/1	a0001	662	254	66	56	92	10	28	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	a0002	662	99	11	11	65	6	6	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	a0003	662	18	0	9	0	2	7	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	a0004	662	10	9	1	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	a0005	662	7	5	1	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	a0006	662	7	0	0	6	0	1	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	a0007	662	6	0	0	6	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	a0008	662	3	3	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	a0009	662	1	1	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934