JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IL12RB1_chr19_18053995_18091934	0/0	a0010	662	1	0	0	0	0	1	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	a0011	662	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	a0012	662	1	0	0	0	0	1	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	a0013	662	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	a0014	662	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	a0015	662	1	1	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	a0016	662	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB2_chr1_67302873_67403724	1/1	a0001	862	310	66	54	143	12	33	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	a0002	862	11	7	4	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	a0003	862	7	7	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	a0004	862	4	0	0	4	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	a0005	862	3	2	1	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	a0006	862	2	0	1	0	1	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	a0007	862	2	0	0	1	0	1	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	a0008	862	2	2	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	a0009	862	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	a0010	862	1	0	0	0	1	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	a0011	862	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	a0012	862	1	0	0	1	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	a0013	862	1	0	0	1	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL13RA1_chrX_118722606_118799533	1/1	a0001	427	272	68	49	120	10	23	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	a0002	42	3	0	0	3	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	a0003	427	1	0	0	0	1	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	a0004	427	1	1	0	0	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	a0005	427	1	1	0	0	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	a0006	427	1	0	0	0	0	1	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	a0007	42	1	0	0	1	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA2_chrX_114998982_115022616	1/1	a0001	380	292	76	50	127	11	26	copy fasta	IL13RA2	chrX	114998982	115022616
IL13RA2_chrX_114998982_115022616	0/0	a0002	380	4	4	0	0	0	0	copy fasta	IL13RA2	chrX	114998982	115022616
IL13RA2_chrX_114998982_115022616	0/0	a0003	380	2	0	2	0	0	0	copy fasta	IL13RA2	chrX	114998982	115022616
IL13RA2_chrX_114998982_115022616	0/0	a0004	380	1	0	1	0	0	0	copy fasta	IL13RA2	chrX	114998982	115022616
IL13_chr5_132653173_132666110	0/1	a0001	146	270	68	40	121	8	32	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	1/0	a0002	146	138	23	31	71	2	10	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	a0003	146	3	2	1	0	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	a0004	146	1	1	0	0	0	0	copy fasta	IL13	chr5	132653173	132666110
IL15RA_chr10_5947384_5982543	0/1	a0001	267	232	81	36	87	6	21	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	1/0	a0002	267	211	12	40	119	12	27	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	a0003	267	7	0	2	5	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	a0004	267	3	0	0	3	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	a0005	267	1	0	0	1	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	a0006	267	1	0	0	1	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	a0007	267	1	1	0	0	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15_chr4_141631583_141738987	1/1	a0001	162	298	86	54	104	16	36	copy fasta	IL15	chr4	141631583	141738987
IL16_chr15_81191879_81319058	1/1	a0001	1332	185	38	33	83	11	18	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0002	1332	57	21	5	29	0	2	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0003	1332	54	0	7	41	0	6	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0004	1332	9	8	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0005	1332	6	6	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0006	1332	5	4	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0007	1332	5	4	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058