JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IL16_chr15_81191879_81319058	0/0	a0008	1332	3	2	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0009	1332	2	0	0	2	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0010	1332	2	0	2	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0011	1332	2	0	2	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0012	1332	2	0	0	0	0	2	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0013	1332	2	2	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0014	1332	1	0	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0015	1332	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0016	1332	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0017	1332	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0018	1332	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0019	1332	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0020	1332	1	0	0	0	1	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	a0021	1332	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL17A_chr6_52181375_52195638	1/1	a0001	155	462	100	80	222	14	44	copy fasta	IL17A	chr6	52181375	52195638
IL17B_chr5_149369267_149384292	0/0	a0000	0	1	0	0	0	0	1	copy fasta	IL17B	chr5	149369267	149384292
IL17B_chr5_149369267_149384292	1/1	a0001	180	383	83	69	168	18	43	copy fasta	IL17B	chr5	149369267	149384292
IL17B_chr5_149369267_149384292	0/0	a0002	180	1	0	1	0	0	0	copy fasta	IL17B	chr5	149369267	149384292
IL17B_chr5_149369267_149384292	0/0	a0003	180	1	1	0	0	0	0	copy fasta	IL17B	chr5	149369267	149384292
IL17C_chr16_88633572_88645468	1/1	a0001	197	433	85	82	198	16	50	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	a0002	197	4	4	0	0	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	a0003	197	4	4	0	0	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	a0004	197	2	0	2	0	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	a0005	197	1	1	0	0	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	a0006	197	1	0	0	1	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	a0007	197	1	0	0	1	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17D_chr13_20698699_20728098	1/1	a0001	202	342	88	58	136	16	42	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	a0002	202	3	1	0	0	0	2	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	a0003	50	1	1	0	0	0	0	copy fasta	IL17D	chr13	20698699	20728098
IL17F_chr6_52231681_52249500	1/1	a0001	163	370	81	57	185	11	34	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	a0002	163	46	9	6	27	1	3	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	a0003	163	6	0	3	0	1	2	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	a0004	163	5	0	4	0	1	0	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	a0005	163	3	0	0	3	0	0	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	a0006	163	1	0	0	1	0	0	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	a0007	163	1	0	0	0	0	1	copy fasta	IL17F	chr6	52231681	52249500
IL17RA_chr22_17080000_17120693	1/1	a0001	866	212	21	38	109	8	34	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0002	866	85	38	25	14	4	4	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0003	866	60	1	8	44	0	7	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0004	866	32	23	6	0	2	1	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0005	866	6	0	0	6	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0006	866	4	4	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0007	866	3	0	0	3	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0008	866	3	0	0	3	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0009	866	2	0	0	0	2	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0010	866	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0011	866	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0012	866	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0013	866	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0014	866	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693