JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IL17RA_chr22_17080000_17120693	0/0	a0015	866	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0016	866	1	0	1	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0017	866	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	a0018	866	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RB_chr3_53841568_53870794	1/1	a0001	502	339	81	68	142	12	34	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	a0002	483	54	5	6	32	3	8	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	a0003	502	40	1	2	34	0	3	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	a0004	502	9	9	0	0	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	a0005	502	3	1	2	0	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	a0006	502	1	0	0	0	1	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	a0007	502	1	1	0	0	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	a0008	502	1	0	0	0	0	1	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	a0009	502	1	0	1	0	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	a0010	502	1	0	1	0	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RC_chr3_9912098_9938621	0/0	a0001	720	238	33	40	128	5	32	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/1	a0002	720	128	50	36	13	12	16	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	a0003	720	7	7	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	a0004	720	2	0	1	0	1	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	a0005	720	2	1	1	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	a0006	720	2	0	0	2	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	a0007	720	2	2	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	a0008	720	1	1	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	a0009	720	1	0	0	1	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	a0010	720	1	1	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	a0011	720	1	0	0	1	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	1/0	a0012	720	1	0	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	a0013	720	1	0	0	1	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	a0014	720	1	0	1	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	a0015	720	1	0	1	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	a0016	720	1	1	0	0	0	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RD_chr3_57084982_57170353	0/1	a0001	739	137	38	37	24	7	30	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	1/0	a0002	739	107	36	7	60	1	2	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	a0003	739	90	5	21	55	1	8	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	a0004	739	6	6	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	a0005	739	5	4	1	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	a0006	739	4	1	2	0	1	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	a0007	739	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	a0008	739	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	a0009	739	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	a0010	739	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	a0011	739	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17REL_chr22_49986811_50017765	1/0	a0001	507	321	77	57	135	13	38	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/1	a0002	507	110	16	20	59	4	10	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	a0003	507	3	0	1	2	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	a0004	507	1	0	0	0	1	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	a0005	507	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	a0006	507	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	a0007	507	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	a0008	507	1	1	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	a0009	507	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765