JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IL17RE_chr3_9897848_9921397	1/1	a0001	667	349	77	80	127	17	46	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	a0002	667	7	7	0	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	a0003	667	4	0	2	0	1	1	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	a0004	667	3	3	0	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	a0005	667	2	2	0	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	a0006	667	1	0	0	1	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	a0007	667	1	0	0	0	0	1	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	a0008	667	1	0	0	0	0	1	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	a0009	667	1	0	0	0	0	1	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	a0010	667	1	1	0	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL18BP_chr11_71993909_72007804	1/1	a0001	194	385	80	67	180	14	42	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	a0002	194	8	8	0	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	a0003	194	3	3	0	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	a0004	194	2	2	0	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	a0005	194	1	1	0	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	a0006	194	1	0	0	1	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	a0007	194	1	0	1	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	a0008	194	1	0	0	1	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18R1_chr2_102350796_102403776	1/1	a0001	541	356	78	57	163	16	40	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	a0002	541	3	0	0	3	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	a0003	541	2	2	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	a0004	541	1	1	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	a0005	541	1	0	0	1	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	a0006	541	1	0	0	1	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	a0007	541	1	1	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	a0008	541	1	0	1	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18RAP_chr2_102418160_102457565	1/1	a0001	599	403	92	65	185	15	44	copy fasta	IL18RAP	chr2	102418160	102457565
IL18RAP_chr2_102418160_102457565	0/0	a0002	599	1	0	1	0	0	0	copy fasta	IL18RAP	chr2	102418160	102457565
IL18RAP_chr2_102418160_102457565	0/0	a0003	599	1	0	0	1	0	0	copy fasta	IL18RAP	chr2	102418160	102457565
IL18RAP_chr2_102418160_102457565	0/0	a0004	599	1	0	0	0	1	0	copy fasta	IL18RAP	chr2	102418160	102457565
IL18_chr11_112138260_112169094	1/1	a0001	193	361	84	72	149	14	40	copy fasta	IL18	chr11	112138260	112169094
IL18_chr11_112138260_112169094	0/0	a0002	193	1	0	0	1	0	0	copy fasta	IL18	chr11	112138260	112169094
IL19_chr1_206765773_206847981	0/1	a0001	177	193	72	41	40	9	30	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	1/0	a0002	177	172	15	29	110	3	14	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/0	a0003	177	1	1	0	0	0	0	copy fasta	IL19	chr1	206765773	206847981
IL1A_chr2_112768925_112789493	1/0	a0001	271	263	72	53	105	7	25	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/1	a0002	271	89	20	19	27	2	20	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	a0003	271	2	2	0	0	0	0	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	a0004	271	1	0	0	0	1	0	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	a0005	271	1	1	0	0	0	0	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	a0006	271	1	1	0	0	0	0	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	a0007	271	1	0	0	0	0	1	copy fasta	IL1A	chr2	112768925	112789493
IL1B_chr2_112824751_112841779	1/1	a0001	269	446	98	79	203	16	48	copy fasta	IL1B	chr2	112824751	112841779
IL1B_chr2_112824751_112841779	0/0	a0002	269	1	0	0	1	0	0	copy fasta	IL1B	chr2	112824751	112841779
IL1B_chr2_112824751_112841779	0/0	a0003	269	1	0	1	0	0	0	copy fasta	IL1B	chr2	112824751	112841779
IL1F10_chr2_113062970_113080843	0/1	a0001	152	178	55	49	33	11	29	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	0/0	a0002	152	148	15	7	116	2	8	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	1/0	a0003	152	124	26	25	63	3	6	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	0/0	a0004	152	1	0	1	0	0	0	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	0/0	a0005	152	1	0	0	0	0	1	copy fasta	IL1F10	chr2	113062970	113080843