JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IL1R1_chr2_102137746_102184874	1/1	a0001	569	349	90	56	157	8	36	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	a0002	569	26	0	0	14	0	12	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	a0003	569	9	3	4	0	2	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	a0004	569	3	0	0	3	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	a0005	569	1	1	0	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	a0006	569	1	0	0	1	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	a0007	569	1	0	0	1	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R2_chr2_101986960_102033544	1/1	a0001	398	412	88	74	185	16	47	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	a0002	398	4	0	0	4	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	a0003	398	3	3	0	0	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	a0004	398	2	0	0	2	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	a0005	398	1	0	0	1	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	a0006	398	1	1	0	0	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	a0007	398	1	0	0	0	0	1	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	a0008	398	1	0	1	0	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	a0009	398	1	0	1	0	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1RAPL1_chrX_28582446_29961718	0/0	a0001	696	133	38	19	56	4	16	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	a0002	318	1	0	0	1	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	a0003	696	1	0	1	0	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL2_chrX_104561199_105772829	0/0	a0001	686	140	38	20	61	5	16	copy fasta	IL1RAPL2	chrX	104561199	105772829
IL1RAPL2_chrX_104561199_105772829	0/0	a0002	588	1	0	1	0	0	0	copy fasta	IL1RAPL2	chrX	104561199	105772829
IL1RAP_chr3_190509085_190656514	1/1	a0001	570	268	93	48	80	12	33	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	a0002	570	1	0	0	0	0	1	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	a0003	570	1	1	0	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RL1_chr2_102306563_102357037	1/1	a0001	556	206	15	37	123	4	25	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	a0002	556	71	37	7	21	2	4	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	a0003	556	29	11	9	0	7	2	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	a0004	556	19	3	7	7	1	1	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	a0005	556	5	0	0	4	0	1	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	a0006	556	4	4	0	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	a0007	556	3	3	0	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	a0008	556	3	0	0	3	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	a0009	556	2	0	2	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	a0010	556	1	1	0	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	a0011	556	1	0	0	1	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	a0012	556	1	1	0	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	a0013	586	1	0	0	0	0	1	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	a0014	556	1	1	0	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	a0015	556	1	0	0	1	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL2_chr2_102182023_102245002	1/1	a0001	575	215	34	42	97	9	31	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	a0002	575	122	47	21	48	3	3	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	a0003	575	19	0	0	13	0	6	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	a0004	575	9	9	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	a0005	575	5	5	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	a0006	575	1	1	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	a0007	575	1	0	1	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	a0008	575	1	1	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	a0009	575	1	1	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RN_chr2_113122598_113139014	1/1	a0001	177	425	97	80	185	18	43	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	a0002	177	2	0	0	1	0	1	copy fasta	IL1RN	chr2	113122598	113139014