Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALPK3_chr15_84812356_84878479	0/0	a0019	1705	1	0	0	1	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0020	1705	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0021	1705	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0022	1705	1	0	0	0	0	1	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0023	1705	1	0	0	1	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0024	1705	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0025	1705	1	0	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0026	1705	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0027	1705	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0028	1705	1	0	1	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0029	1705	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPK3_chr15_84812356_84878479	0/0	a0030	1705	1	1	0	0	0	0	copy fasta	ALPK3	chr15	84812356	84878479
ALPL_chr1_21504423_21583410	1/0	a0001	524	222	60	46	86	10	19	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/1	a0002	524	124	23	23	62	3	12	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	a0003	524	13	1	5	0	3	4	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	a0004	524	3	3	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	a0005	524	2	0	0	0	0	2	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	a0006	524	2	2	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	a0007	524	1	1	0	0	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	a0008	524	1	0	0	1	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	a0009	524	1	0	0	0	0	1	copy fasta	ALPL	chr1	21504423	21583410
ALPL_chr1_21504423_21583410	0/0	a0010	524	1	0	0	1	0	0	copy fasta	ALPL	chr1	21504423	21583410
ALPP_chr2_232373751_232387889	0/0	a0001	535	152	22	29	83	4	14	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	1/0	a0002	535	135	43	16	51	5	19	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0003	535	51	6	3	36	2	4	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/1	a0004	535	36	7	11	5	4	8	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0005	535	7	2	0	5	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0006	535	3	0	0	3	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0007	535	2	0	0	2	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0008	535	2	2	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0009	535	2	0	2	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0010	535	2	2	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0011	535	2	0	2	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0012	535	2	2	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0013	535	1	0	0	1	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0014	535	1	0	0	1	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0015	535	1	0	0	1	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0016	535	1	0	1	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0017	535	1	1	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0018	535	1	1	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0019	535	1	0	0	0	1	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0020	535	1	1	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0021	535	1	0	0	1	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0022	535	1	0	1	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0023	272	1	1	0	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0024	535	1	0	0	1	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0025	535	1	0	0	0	0	1	copy fasta	ALPP	chr2	232373751	232387889
ALPP_chr2_232373751_232387889	0/0	a0026	535	1	0	1	0	0	0	copy fasta	ALPP	chr2	232373751	232387889
ALS2CL_chr3_46663995_46698679	1/1	a0001	953	215	15	47	114	10	27	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0002	953	147	63	22	48	5	9	copy fasta	ALS2CL	chr3	46663995	46698679