JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IL1RN_chr2_113122598_113139014	0/0	a0003	177	1	1	0	0	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL20RA_chr6_136994971_137049965	0/1	a0001	553	197	29	54	78	11	24	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	a0002	553	61	17	8	24	3	9	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	1/0	a0003	553	57	50	6	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	a0004	553	15	0	0	4	0	11	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	a0005	553	1	1	0	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	a0006	553	1	1	0	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RB_chr3_136952983_137016085	1/1	a0001	311	313	79	55	127	10	40	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	a0002	311	2	2	0	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	a0003	311	1	1	0	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	a0004	311	1	1	0	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	a0005	311	1	0	0	1	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	a0006	311	1	0	1	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	a0007	311	1	1	0	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20_chr1_206860623_206874223	1/1	a0001	176	454	95	86	208	18	45	copy fasta	IL20	chr1	206860623	206874223
IL20_chr1_206860623_206874223	0/0	a0002	78	1	1	0	0	0	0	copy fasta	IL20	chr1	206860623	206874223
IL20_chr1_206860623_206874223	0/0	a0003	176	1	0	0	0	0	1	copy fasta	IL20	chr1	206860623	206874223
IL21R_chr16_27397174_27457042	1/1	a0001	538	351	80	69	144	16	40	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	a0002	538	13	13	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	a0003	538	4	3	1	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	a0004	538	1	0	0	1	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	a0005	538	1	1	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	a0006	538	1	0	0	1	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	a0007	538	1	1	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21_chr4_122605108_122626066	1/1	a0001	162	428	98	70	208	16	34	copy fasta	IL21	chr4	122605108	122626066
IL22RA1_chr1_24114771_24148140	0/1	a0001	574	180	19	27	102	9	22	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	1/0	a0002	574	140	37	37	43	4	18	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	a0003	574	36	18	12	0	2	4	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	a0004	574	8	5	3	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	a0005	574	5	0	0	5	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	a0006	574	4	2	0	0	1	1	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	a0007	574	3	3	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	a0008	574	2	1	1	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	a0009	574	2	0	0	2	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	a0010	574	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	a0011	574	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	a0012	574	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	a0013	574	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	a0014	574	1	0	0	0	0	1	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	a0015	574	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA2_chr6_137138820_137178644	1/1	a0001	263	415	90	80	190	11	42	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	a0002	263	5	1	1	1	1	1	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	a0003	263	3	0	0	3	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	a0004	263	2	2	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	a0005	263	1	0	0	0	0	1	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	a0006	263	1	1	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	a0007	263	1	0	1	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22_chr12_68243242_68258604	1/1	a0001	179	442	91	80	204	18	47	copy fasta	IL22	chr12	68243242	68258604
IL22_chr12_68243242_68258604	0/0	a0002	179	3	3	0	0	0	0	copy fasta	IL22	chr12	68243242	68258604
IL22_chr12_68243242_68258604	0/0	a0003	179	1	0	0	0	0	1	copy fasta	IL22	chr12	68243242	68258604