JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IL23A_chr12_56333884_56345410	1/1	a0001	189	348	81	62	147	16	40	copy fasta	IL23A	chr12	56333884	56345410
IL23A_chr12_56333884_56345410	0/0	a0002	189	1	1	0	0	0	0	copy fasta	IL23A	chr12	56333884	56345410
IL23A_chr12_56333884_56345410	0/0	a0003	189	1	0	0	1	0	0	copy fasta	IL23A	chr12	56333884	56345410
IL23R_chr1_67161454_67264979	0/0	a0001	629	121	29	21	60	3	8	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	a0002	629	112	34	20	42	5	11	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	a0003	629	25	10	5	6	4	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	a0004	629	11	4	3	1	1	2	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	a0005	629	8	0	0	7	1	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	a0006	629	4	0	3	0	1	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	a0007	629	3	0	3	0	0	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	a0008	629	2	0	1	0	1	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	a0009	629	1	0	0	0	0	1	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	a0010	629	1	0	0	0	0	1	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	a0011	629	1	1	0	0	0	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	a0012	629	1	0	0	0	0	1	copy fasta	IL23R	chr1	67161454	67264979
IL24_chr1_206892443_206909139	1/1	a0001	206	224	53	36	105	4	24	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	a0002	206	137	24	32	63	8	10	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	a0003	206	9	9	0	0	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	a0004	206	7	7	0	0	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	a0005	206	4	0	0	4	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	a0006	206	1	1	0	0	0	0	copy fasta	IL24	chr1	206892443	206909139
IL25_chr14_23367809_23381403	1/1	a0001	161	422	96	77	186	18	43	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	a0002	161	1	0	1	0	0	0	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	a0003	161	1	0	0	0	0	1	copy fasta	IL25	chr14	23367809	23381403
IL26_chr12_68196349_68230810	1/1	a0001	171	400	100	75	163	16	44	copy fasta	IL26	chr12	68196349	68230810
IL26_chr12_68196349_68230810	0/0	a0002	171	2	0	1	1	0	0	copy fasta	IL26	chr12	68196349	68230810
IL27RA_chr19_14026762_14058218	1/1	a0001	636	316	72	65	118	17	42	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	a0002	636	60	1	9	47	1	2	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	a0003	636	12	7	1	2	0	2	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	a0004	636	5	0	0	5	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	a0005	636	4	4	0	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	a0006	636	1	1	0	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	a0007	636	1	0	0	1	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	a0008	636	1	1	0	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	a0009	636	1	0	0	1	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	a0010	636	1	0	1	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27_chr16_28494362_28511834	1/1	a0001	243	296	87	42	120	6	39	copy fasta	IL27	chr16	28494362	28511834
IL27_chr16_28494362_28511834	0/0	a0002	243	58	3	21	25	5	4	copy fasta	IL27	chr16	28494362	28511834
IL27_chr16_28494362_28511834	0/0	a0003	243	33	4	3	21	1	4	copy fasta	IL27	chr16	28494362	28511834
IL27_chr16_28494362_28511834	0/0	a0004	243	7	0	4	0	2	1	copy fasta	IL27	chr16	28494362	28511834
IL2RA_chr10_6005689_6067367	1/1	a0001	272	409	93	70	188	18	38	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	a0002	272	4	0	0	0	0	4	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	a0003	272	1	1	0	0	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RB_chr22_37120843_37154916	1/1	a0001	551	338	78	49	165	10	34	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	a0002	551	85	3	25	40	6	11	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	a0003	551	7	7	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	a0004	551	5	3	2	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	a0005	551	4	4	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	a0006	551	3	1	2	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	a0007	551	3	0	0	3	0	0	copy fasta	IL2RB	chr22	37120843	37154916