JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IL2RB_chr22_37120843_37154916	0/0	a0008	551	3	0	0	3	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	a0009	551	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	a0010	551	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	a0011	551	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	a0012	551	1	0	0	1	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	a0013	551	1	0	0	0	0	1	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	a0014	551	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RG_chrX_71102404_71116577	1/1	a0001	369	278	78	50	114	5	29	copy fasta	IL2RG	chrX	71102404	71116577
IL2RG_chrX_71102404_71116577	0/0	a0002	367	2	0	0	1	0	1	copy fasta	IL2RG	chrX	71102404	71116577
IL2RG_chrX_71102404_71116577	0/0	a0003	271	1	0	0	1	0	0	copy fasta	IL2RG	chrX	71102404	71116577
IL2RG_chrX_71102404_71116577	0/0	a0004	369	1	0	0	1	0	0	copy fasta	IL2RG	chrX	71102404	71116577
IL2RG_chrX_71102404_71116577	0/0	a0005	145	1	0	0	1	0	0	copy fasta	IL2RG	chrX	71102404	71116577
IL2_chr4_122446470_122461725	1/1	a0001	153	434	96	70	212	18	36	copy fasta	IL2	chr4	122446470	122461725
IL31RA_chr5_55846357_55927850	1/1	a0001	764	191	40	40	78	9	22	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	a0002	764	96	24	15	42	5	10	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	a0003	764	20	18	2	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	a0004	764	4	0	2	2	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	a0005	764	2	2	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	a0006	764	2	0	2	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	a0007	764	2	0	1	0	1	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	a0008	768	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	a0009	764	1	0	0	0	1	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	a0010	764	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	a0011	764	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	a0012	764	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31_chr12_122167029_122179221	1/1	a0001	164	367	96	73	144	14	38	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	a0002	164	1	0	0	1	0	0	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	a0003	164	1	0	0	1	0	0	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	a0004	164	1	0	1	0	0	0	copy fasta	IL31	chr12	122167029	122179221
IL32_chr16_3060640_3074530	1/1	a0001	188	450	95	78	212	17	46	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	a0002	188	3	0	2	0	1	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	a0003	188	2	0	0	0	0	2	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	a0004	188	1	1	0	0	0	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	a0005	188	1	0	1	0	0	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	a0006	188	1	0	1	0	0	0	copy fasta	IL32	chr16	3060640	3074530
IL33_chr9_6210807_6262983	1/1	a0001	270	354	83	74	137	18	40	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	a0002	270	6	6	0	0	0	0	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	a0003	270	1	1	0	0	0	0	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	a0004	270	1	0	0	1	0	0	copy fasta	IL33	chr9	6210807	6262983
IL34_chr16_70641559_70665682	0/0	a0001	242	311	84	51	133	9	34	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	1/1	a0002	242	100	0	29	54	6	9	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	a0003	212	17	2	1	8	2	4	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	a0004	242	3	2	1	0	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	a0005	242	2	0	0	2	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	a0006	242	1	0	0	0	1	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	a0007	212	1	0	0	1	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	a0008	242	1	0	0	0	0	1	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	a0009	242	1	0	0	1	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	a0010	242	1	0	0	1	0	0	copy fasta	IL34	chr16	70641559	70665682
IL36A_chr2_113000459_113013044	0/1	a0001	158	365	65	61	188	10	40	copy fasta	IL36A	chr2	113000459	113013044