JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IL36A_chr2_113000459_113013044	1/0	a0002	158	44	23	12	2	4	2	copy fasta	IL36A	chr2	113000459	113013044
IL36A_chr2_113000459_113013044	0/0	a0003	158	5	0	3	0	0	2	copy fasta	IL36A	chr2	113000459	113013044
IL36A_chr2_113000459_113013044	0/0	a0004	158	4	4	0	0	0	0	copy fasta	IL36A	chr2	113000459	113013044
IL36A_chr2_113000459_113013044	0/0	a0005	158	2	2	0	0	0	0	copy fasta	IL36A	chr2	113000459	113013044
IL36B_chr2_113017089_113057867	1/1	a0001	164	394	87	74	168	18	45	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	a0002	164	5	5	0	0	0	0	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	a0003	164	4	0	0	4	0	0	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	a0004	164	1	0	0	0	0	1	copy fasta	IL36B	chr2	113017089	113057867
IL36G_chr2_112973006_112990658	1/1	a0001	169	399	79	63	195	16	44	copy fasta	IL36G	chr2	112973006	112990658
IL36G_chr2_112973006_112990658	0/0	a0002	169	16	15	1	0	0	0	copy fasta	IL36G	chr2	112973006	112990658
IL36G_chr2_112973006_112990658	0/0	a0003	169	5	0	0	5	0	0	copy fasta	IL36G	chr2	112973006	112990658
IL36RN_chr2_113054198_113069744	1/1	a0001	155	429	88	77	198	18	46	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	a0002	155	9	0	0	9	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	a0003	155	6	0	0	6	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	a0004	155	2	1	0	1	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	a0005	155	2	2	0	0	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	a0006	155	1	0	1	0	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	a0007	155	1	1	0	0	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL37_chr2_112906165_112923882	0/0	a0001	218	247	10	52	153	5	27	copy fasta	IL37	chr2	112906165	112923882
IL37_chr2_112906165_112923882	1/0	a0002	218	123	59	8	39	3	13	copy fasta	IL37	chr2	112906165	112923882
IL37_chr2_112906165_112923882	0/1	a0003	218	24	19	2	0	2	0	copy fasta	IL37	chr2	112906165	112923882
IL37_chr2_112906165_112923882	0/0	a0004	218	6	6	0	0	0	0	copy fasta	IL37	chr2	112906165	112923882
IL37_chr2_112906165_112923882	0/0	a0005	218	5	5	0	0	0	0	copy fasta	IL37	chr2	112906165	112923882
IL37_chr2_112906165_112923882	0/0	a0006	218	1	1	0	0	0	0	copy fasta	IL37	chr2	112906165	112923882
IL3RA_chrX_1331785_1387689	1/1	a0001	378	92	31	15	30	4	10	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0002	378	9	0	6	1	1	1	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0003	29	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0004	109	1	1	0	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0005	378	1	0	0	0	0	1	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0006	281	1	0	1	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0007	346	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0008	379	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0009	281	1	0	1	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0010	248	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0011	378	1	0	0	0	0	1	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0012	207	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0013	168	1	0	0	0	0	1	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0014	168	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0015	168	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	a0016	207	1	1	0	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3_chr5_132055655_132068204	1/1	a0001	152	227	48	47	98	11	21	copy fasta	IL3	chr5	132055655	132068204
IL3_chr5_132055655_132068204	0/0	a0002	152	218	42	33	118	4	21	copy fasta	IL3	chr5	132055655	132068204
IL3_chr5_132055655_132068204	0/0	a0003	152	3	3	0	0	0	0	copy fasta	IL3	chr5	132055655	132068204
IL3_chr5_132055655_132068204	0/0	a0004	152	1	0	0	0	1	0	copy fasta	IL3	chr5	132055655	132068204
IL3_chr5_132055655_132068204	0/0	a0005	152	1	1	0	0	0	0	copy fasta	IL3	chr5	132055655	132068204
IL4I1_chr19_49884654_49901887	1/1	a0001	567	412	91	75	182	14	48	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	a0002	567	6	0	0	6	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	a0003	567	3	3	0	0	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	a0004	567	2	0	1	0	0	1	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	a0005	565	1	0	0	1	0	0	copy fasta	IL4I1	chr19	49884654	49901887