JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IL4I1_chr19_49884654_49901887	0/0	a0006	567	1	0	0	1	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	a0007	567	1	0	0	0	0	1	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	a0008	567	1	0	0	1	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	a0009	567	1	0	0	1	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4R_chr16_27308974_27369778	0/0	a0001	825	100	13	11	60	6	10	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	1/1	a0002	825	85	9	25	31	6	12	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0003	825	28	9	5	13	0	1	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0004	825	18	0	3	9	0	6	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0005	825	14	2	9	3	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0006	825	11	11	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0007	825	8	0	0	8	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0008	825	7	7	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0009	825	7	7	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0010	825	7	7	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0011	825	5	5	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0012	825	4	4	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0013	825	4	3	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0014	825	4	1	0	0	0	3	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0015	825	3	0	1	0	2	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0016	825	3	3	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0017	825	3	2	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0018	825	3	1	0	1	0	1	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0019	825	2	2	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0020	825	2	2	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0021	825	1	0	0	0	0	1	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0022	825	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0023	825	1	0	0	1	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0024	825	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0025	825	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0026	825	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0027	825	1	0	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0028	825	1	0	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0029	825	1	0	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0030	825	1	0	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0031	825	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0032	825	1	0	0	1	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0033	825	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	a0034	825	1	0	0	1	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4_chr5_132668989_132687678	1/1	a0001	153	419	89	80	200	10	38	copy fasta	IL4	chr5	132668989	132687678
IL4_chr5_132668989_132687678	0/0	a0002	153	2	0	0	2	0	0	copy fasta	IL4	chr5	132668989	132687678
IL4_chr5_132668989_132687678	0/0	a0003	153	1	1	0	0	0	0	copy fasta	IL4	chr5	132668989	132687678
IL5RA_chr3_3061324_3115374	1/1	a0001	420	290	62	49	145	11	21	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	a0002	420	161	33	32	61	6	29	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	a0003	420	1	0	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	a0004	420	1	1	0	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	a0005	420	1	0	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5_chr5_132536445_132548522	1/1	a0001	134	430	98	74	200	18	38	copy fasta	IL5	chr5	132536445	132548522
IL5_chr5_132536445_132548522	0/0	a0002	134	4	0	0	4	0	0	copy fasta	IL5	chr5	132536445	132548522
IL6R_chr1_154400343_154474450	1/0	a0001	468	224	60	32	93	6	32	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/1	a0002	468	107	8	32	52	4	10	copy fasta	IL6R	chr1	154400343	154474450