JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IL6R_chr1_154400343_154474450	0/0	a0003	468	14	14	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	a0004	468	1	0	0	1	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6ST_chr5_55930095_55999963	1/1	a0001	918	207	36	50	76	12	31	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	a0002	918	38	19	9	8	2	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	a0003	918	22	20	0	0	2	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	a0004	918	10	9	1	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	a0005	918	1	0	0	0	0	1	copy fasta	IL6ST	chr5	55930095	55999963
IL6_chr7_22722200_22736998	1/1	a0001	212	393	87	72	171	16	45	copy fasta	IL6	chr7	22722200	22736998
IL6_chr7_22722200_22736998	0/0	a0002	212	12	1	4	6	0	1	copy fasta	IL6	chr7	22722200	22736998
IL6_chr7_22722200_22736998	0/0	a0003	212	8	8	0	0	0	0	copy fasta	IL6	chr7	22722200	22736998
IL6_chr7_22722200_22736998	0/0	a0004	212	4	4	0	0	0	0	copy fasta	IL6	chr7	22722200	22736998
IL6_chr7_22722200_22736998	0/0	a0005	212	1	0	0	1	0	0	copy fasta	IL6	chr7	22722200	22736998
IL7R_chr5_35851891_35884603	1/0	a0001	459	125	7	24	75	2	16	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	a0002	459	102	35	12	47	1	7	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	a0003	459	71	6	14	37	6	8	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/1	a0004	459	70	27	20	10	4	8	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	a0005	459	24	17	1	6	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	a0006	459	10	0	1	9	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	a0007	459	2	2	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	a0008	459	1	0	0	0	0	1	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	a0009	459	1	0	1	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	a0010	459	1	0	0	0	0	1	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	a0011	459	1	0	0	0	0	1	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	a0012	459	1	0	1	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	a0013	459	1	0	0	0	1	0	copy fasta	IL7R	chr5	35851891	35884603
IL7_chr8_78727772_78810463	1/1	a0001	177	261	84	48	94	14	19	copy fasta	IL7	chr8	78727772	78810463
IL7_chr8_78727772_78810463	0/0	a0002	177	3	0	0	0	0	3	copy fasta	IL7	chr8	78727772	78810463
IL9R_chrX_155992696_156015817	0/0	a0001	522	103	32	8	56	0	7	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	1/1	a0002	521	69	8	27	20	6	6	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0003	520	10	10	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0004	521	10	0	3	3	2	2	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0005	520	3	3	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0006	522	3	1	0	2	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0007	523	3	3	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0008	522	3	0	0	3	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0009	522	2	0	0	2	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0010	521	2	0	0	0	0	2	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0011	521	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0012	522	1	0	0	0	0	1	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0013	522	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0014	522	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0015	522	1	0	0	1	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0016	418	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0017	522	1	0	0	1	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0018	520	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0019	520	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0020	235	1	0	0	1	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0021	163	1	0	0	1	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	a0022	163	1	0	0	1	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9_chr5_135887246_135900841	1/1	a0001	144	422	73	74	218	15	40	copy fasta	IL9	chr5	135887246	135900841