JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IL9_chr5_135887246_135900841	0/0	a0002	144	27	14	6	0	1	6	copy fasta	IL9	chr5	135887246	135900841
IL9_chr5_135887246_135900841	0/0	a0003	84	2	0	0	2	0	0	copy fasta	IL9	chr5	135887246	135900841
IL9_chr5_135887246_135900841	0/0	a0004	144	1	1	0	0	0	0	copy fasta	IL9	chr5	135887246	135900841
ILDR1_chr3_121982323_122027247	1/1	a0001	546	227	34	54	101	12	24	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0002	546	104	24	20	35	4	21	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0003	546	12	10	2	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0004	546	8	8	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0005	546	7	7	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0006	546	3	0	0	3	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0007	546	3	3	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0008	257	2	0	0	2	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0009	546	2	0	2	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0010	546	2	2	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0011	546	1	1	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0012	546	1	0	1	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0013	546	1	0	0	0	0	1	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0014	546	1	0	1	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0015	546	1	0	1	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0016	546	1	0	0	1	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0017	546	1	1	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	a0018	546	1	0	1	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR2_chr1_166903187_166980540	0/0	a0001	639	314	83	51	137	8	35	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	a0002	639	23	7	12	0	3	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	a0003	639	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	a0004	639	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	a0005	639	1	0	0	0	1	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	a0006	639	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	a0007	639	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILF2_chr1_153656788_153675993	1/1	a0001	390	387	98	63	166	16	42	copy fasta	ILF2	chr1	153656788	153675993
ILF2_chr1_153656788_153675993	0/0	a0002	390	1	0	1	0	0	0	copy fasta	ILF2	chr1	153656788	153675993
ILF3_chr19_10649346_10697400	1/1	a0001	898	337	61	61	159	16	38	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	a0002	898	5	5	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	a0003	898	1	0	1	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	a0004	898	1	1	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	a0005	898	1	0	0	1	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	a0006	898	1	1	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILKAP_chr2_238165402_238208695	1/1	a0001	392	409	94	69	193	11	40	copy fasta	ILKAP	chr2	238165402	238208695
ILKAP_chr2_238165402_238208695	0/0	a0002	392	9	0	1	5	1	2	copy fasta	ILKAP	chr2	238165402	238208695
ILKAP_chr2_238165402_238208695	0/0	a0003	392	1	0	0	1	0	0	copy fasta	ILKAP	chr2	238165402	238208695
ILKAP_chr2_238165402_238208695	0/0	a0004	392	1	0	0	1	0	0	copy fasta	ILKAP	chr2	238165402	238208695
ILK_chr11_6598774_6615870	1/1	a0001	452	445	95	85	201	16	46	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	a0002	452	5	0	0	5	0	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	a0003	452	1	1	0	0	0	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	a0004	452	1	0	1	0	0	0	copy fasta	ILK	chr11	6598774	6615870
ILRUN_chr6_34582288_34701767	1/1	a0001	298	316	80	52	138	10	34	copy fasta	ILRUN	chr6	34582288	34701767
ILVBL_chr19_15109987_15130786	1/1	a0001	632	395	76	79	174	18	46	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	a0002	632	22	0	2	18	0	2	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	a0003	632	10	10	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	a0004	632	2	2	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	a0005	632	1	0	0	0	0	1	copy fasta	ILVBL	chr19	15109987	15130786