JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ILVBL_chr19_15109987_15130786	0/0	a0006	632	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	a0007	632	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	a0008	632	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	a0009	632	1	0	1	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	a0010	632	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	a0011	632	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	a0012	632	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	a0013	632	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	a0014	632	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	a0015	632	1	0	0	0	0	1	copy fasta	ILVBL	chr19	15109987	15130786
IMMP1L_chr11_31427401_31514622	1/1	a0001	166	297	85	48	116	8	38	copy fasta	IMMP1L	chr11	31427401	31514622
IMMP1L_chr11_31427401_31514622	0/0	a0002	166	1	1	0	0	0	0	copy fasta	IMMP1L	chr11	31427401	31514622
IMMP2L_chr7_110657644_111567492	0/0	a0001	175	83	52	12	6	2	11	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	a0002	175	1	0	0	0	0	1	copy fasta	IMMP2L	chr7	110657644	111567492
IMMT_chr2_86138936_86200462	1/1	a0001	758	222	84	32	78	10	16	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	a0002	758	110	0	28	64	2	16	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	a0003	758	36	0	0	32	0	4	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	a0004	758	6	2	2	0	0	2	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	a0005	758	2	0	2	0	0	0	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	a0006	758	1	0	0	1	0	0	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	a0007	758	1	0	0	1	0	0	copy fasta	IMMT	chr2	86138936	86200462
IMP3_chr15_75634093_75645224	1/1	a0001	184	394	93	72	175	12	40	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	a0002	184	3	0	0	3	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	a0003	184	1	1	0	0	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	a0004	184	1	0	0	1	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	a0005	184	1	0	0	1	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP4_chr2_130337897_130352967	1/1	a0001	291	367	79	58	182	9	37	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	a0002	291	16	1	6	0	5	4	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	a0003	291	10	10	0	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	a0004	291	5	3	2	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	a0005	291	1	0	0	0	0	1	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	a0006	291	1	1	0	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	a0007	291	1	0	0	1	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	a0008	291	1	0	0	1	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMPA1_chr8_81651914_81691325	1/1	a0001	277	378	95	74	154	12	41	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	a0002	277	1	1	0	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	a0003	277	1	0	0	0	0	1	copy fasta	IMPA1	chr8	81651914	81691325
IMPA2_chr18_11976507_12035877	1/1	a0001	288	356	94	68	145	14	33	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	a0002	288	3	0	0	3	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	a0003	288	3	3	0	0	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	a0004	288	1	1	0	0	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	a0005	288	1	0	0	0	0	1	copy fasta	IMPA2	chr18	11976507	12035877
IMPACT_chr18_24421670_24458531	0/0	a0001	320	308	88	61	120	12	27	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	1/1	a0002	320	69	3	1	58	0	5	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	a0003	320	21	3	9	1	2	6	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	a0004	268	1	0	0	1	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	a0005	320	1	0	0	0	0	1	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	a0006	320	1	0	0	0	0	1	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	a0007	320	1	0	1	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPDH1_chr7_128387277_128414982	1/1	a0001	599	411	91	76	186	12	44	copy fasta	IMPDH1	chr7	128387277	128414982