JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IMPDH1_chr7_128387277_128414982	0/0	a0002	599	2	1	0	1	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	a0003	599	1	0	0	1	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH2_chr3_49019325_49034398	1/1	a0001	514	302	84	56	103	16	41	copy fasta	IMPDH2	chr3	49019325	49034398
IMPDH2_chr3_49019325_49034398	0/0	a0002	514	1	0	0	0	0	1	copy fasta	IMPDH2	chr3	49019325	49034398
IMPDH2_chr3_49019325_49034398	0/0	a0003	514	1	0	0	1	0	0	copy fasta	IMPDH2	chr3	49019325	49034398
IMPG1_chr6_75916114_76077662	0/0	a0001	797	89	31	8	45	0	5	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	1/0	a0002	797	57	23	9	14	3	7	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0003	797	37	7	12	14	1	3	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0004	797	19	0	0	19	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/1	a0005	797	14	0	8	1	2	2	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0006	797	14	0	3	8	1	2	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0007	797	13	6	6	0	1	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0008	797	11	0	4	7	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0009	797	10	3	0	7	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0010	797	8	0	3	4	1	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0011	797	6	0	2	0	1	3	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0012	797	5	1	3	0	0	1	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0013	797	4	0	0	4	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0014	797	3	0	0	3	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0015	797	2	2	0	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0016	797	1	0	0	0	0	1	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0017	797	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0018	797	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0019	797	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0020	797	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0021	797	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0022	797	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0023	797	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0024	797	1	1	0	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	a0025	797	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG2_chr3_101217546_101325575	0/0	a0001	1241	215	53	37	95	8	22	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	1/1	a0002	1241	125	28	25	49	8	13	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	a0003	1241	6	6	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	a0004	1241	2	0	2	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	a0005	1241	2	0	0	2	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	a0006	1241	2	0	0	2	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	a0007	9	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	a0008	1241	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	a0009	1241	1	0	0	0	0	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	a0010	1241	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	a0011	1241	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	a0012	1241	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	a0013	1241	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	a0014	1241	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
INAFM1_chr19_47269885_47280723	1/0	a0001	142	212	64	45	75	8	19	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/1	a0002	142	165	18	24	93	8	21	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	a0003	142	7	6	1	0	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	a0004	142	2	2	0	0	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	a0005	142	2	2	0	0	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	a0006	142	1	0	0	1	0	0	copy fasta	INAFM1	chr19	47269885	47280723