JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
INAFM1_chr19_47269885_47280723	0/0	a0007	142	1	0	0	1	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	a0008	142	1	0	0	1	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	a0009	142	1	0	0	1	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	a0010	136	1	0	0	1	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	a0011	87	1	0	0	1	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM2_chr15_40318692_40331715	1/1	a0001	153	396	87	71	170	18	48	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	a0002	153	6	5	1	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAVA_chr1_200889900_200920742	0/1	a0001	578	282	42	51	150	13	25	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	1/0	a0002	578	59	33	14	2	3	6	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	a0003	578	40	12	2	19	0	7	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	a0004	578	25	2	5	15	0	3	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	a0005	578	4	0	0	4	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	a0006	578	3	3	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	a0007	578	3	0	0	3	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	a0008	578	1	0	0	1	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	a0009	578	1	0	0	0	0	1	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	a0010	578	1	1	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	a0011	578	1	0	0	1	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	a0012	578	1	1	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	a0013	578	1	0	0	1	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	a0014	578	1	0	1	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	a0015	578	1	0	1	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INA_chr10_103272138_103295346	1/1	a0001	499	405	87	63	197	14	42	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	a0002	499	9	4	3	0	2	0	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	a0003	499	2	0	0	0	0	2	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	a0004	499	1	0	0	1	0	0	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	a0005	499	1	1	0	0	0	0	copy fasta	INA	chr10	103272138	103295346
INCA1_chr17_4983130_5002522	1/0	a0001	236	366	81	71	164	12	37	copy fasta	INCA1	chr17	4983130	5002522
INCA1_chr17_4983130_5002522	0/1	a0002	236	29	4	5	14	4	1	copy fasta	INCA1	chr17	4983130	5002522
INCA1_chr17_4983130_5002522	0/0	a0003	236	1	0	0	1	0	0	copy fasta	INCA1	chr17	4983130	5002522
INCA1_chr17_4983130_5002522	0/0	a0004	236	1	0	0	1	0	0	copy fasta	INCA1	chr17	4983130	5002522
INCA1_chr17_4983130_5002522	0/0	a0005	236	1	1	0	0	0	0	copy fasta	INCA1	chr17	4983130	5002522
INCENP_chr11_62119011_62158169	1/0	a0001	918	136	30	34	53	3	15	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0002	918	77	0	3	63	3	8	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/1	a0003	918	45	9	13	16	3	3	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0004	918	33	6	13	6	5	3	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0005	923	13	12	1	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0006	918	11	11	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0007	918	4	4	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0008	923	4	4	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0009	918	4	4	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0010	918	3	0	2	0	0	1	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0011	918	3	2	1	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0012	918	3	3	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0013	923	2	0	1	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0014	908	2	0	0	0	0	2	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0015	913	2	1	0	0	1	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0016	918	2	0	1	0	1	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0017	918	1	0	0	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	a0018	918	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169