Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALS2CL_chr3_46663995_46698679	0/0	a0003	953	7	5	2	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0004	953	7	7	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0005	953	2	1	1	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0006	953	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0007	953	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0008	953	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0009	953	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0010	953	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0011	953	1	0	0	0	0	1	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0012	953	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0013	953	1	0	0	0	1	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0014	953	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0015	953	1	0	0	0	0	1	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0016	953	1	0	0	1	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2CL_chr3_46663995_46698679	0/0	a0017	953	1	1	0	0	0	0	copy fasta	ALS2CL	chr3	46663995	46698679
ALS2_chr2_201695267_201785933	0/1	a0001	1657	311	57	49	155	13	36	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	1/0	a0002	1657	19	13	3	0	1	1	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	a0003	1657	6	4	1	0	0	1	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	a0004	1657	4	0	4	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	a0005	1657	2	0	0	2	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	a0006	1657	2	0	0	2	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	a0007	1657	2	0	0	0	2	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	a0008	1657	1	0	0	1	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	a0009	1657	1	0	0	1	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	a0010	1657	1	0	1	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	a0011	1657	1	1	0	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	a0012	1657	1	1	0	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	a0013	1657	1	0	0	1	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	a0014	1657	1	1	0	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALS2_chr2_201695267_201785933	0/0	a0015	1657	1	1	0	0	0	0	copy fasta	ALS2	chr2	201695267	201785933
ALX1_chr12_85275220_85306784	1/1	a0001	326	378	85	67	175	13	36	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	a0002	326	2	2	0	0	0	0	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	a0003	326	1	0	1	0	0	0	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	a0004	326	1	0	0	1	0	0	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	a0005	326	1	1	0	0	0	0	copy fasta	ALX1	chr12	85275220	85306784
ALX1_chr12_85275220_85306784	0/0	a0006	326	1	0	0	0	1	0	copy fasta	ALX1	chr12	85275220	85306784
ALX3_chr1_110054870_110075672	1/1	a0001	343	417	96	71	192	17	39	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	a0002	343	2	0	0	2	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	a0003	343	1	0	0	0	1	0	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	a0004	343	1	0	0	0	0	1	copy fasta	ALX3	chr1	110054870	110075672
ALX3_chr1_110054870_110075672	0/0	a0005	343	1	0	1	0	0	0	copy fasta	ALX3	chr1	110054870	110075672
ALX4_chr11_44255440_44315139	1/1	a0001	411	216	55	41	92	14	12	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	a0002	411	126	1	20	79	4	22	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	a0003	411	33	26	4	0	0	3	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	a0004	407	10	9	1	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	a0005	411	1	0	0	1	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	a0006	407	1	1	0	0	0	0	copy fasta	ALX4	chr11	44255440	44315139
ALX4_chr11_44255440_44315139	0/0	a0007	411	1	0	0	0	0	1	copy fasta	ALX4	chr11	44255440	44315139
ALYREF_chr17_81882835_81896586	1/1	a0001	264	318	83	66	113	8	46	copy fasta	ALYREF	chr17	81882835	81896586
ALYREF_chr17_81882835_81896586	0/0	a0002	264	3	0	0	3	0	0	copy fasta	ALYREF	chr17	81882835	81896586