JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ING5_chr2_241697039_241734478	0/0	a0002	240	1	0	0	1	0	0	copy fasta	ING5	chr2	241697039	241734478
INHA_chr2_219567310_219580711	1/1	a0001	366	417	80	83	194	16	42	copy fasta	INHA	chr2	219567310	219580711
INHA_chr2_219567310_219580711	0/0	a0002	366	14	14	0	0	0	0	copy fasta	INHA	chr2	219567310	219580711
INHA_chr2_219567310_219580711	0/0	a0003	366	3	0	1	0	0	2	copy fasta	INHA	chr2	219567310	219580711
INHBA_chr7_41680114_41708090	1/1	a0001	426	371	92	73	147	14	43	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	a0002	426	1	0	0	1	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	a0003	426	1	0	0	0	0	1	copy fasta	INHBA	chr7	41680114	41708090
INHBA_chr7_41680114_41708090	0/0	a0004	426	1	0	1	0	0	0	copy fasta	INHBA	chr7	41680114	41708090
INHBB_chr2_120341136_120356803	1/1	a0001	407	328	48	70	162	14	32	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	a0002	407	115	46	12	42	2	13	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	a0003	99	8	2	2	3	0	1	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	a0004	99	3	1	0	2	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	a0005	407	1	1	0	0	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBB_chr2_120341136_120356803	0/0	a0006	407	1	0	0	1	0	0	copy fasta	INHBB	chr2	120341136	120356803
INHBC_chr12_57429784_57457062	1/1	a0001	352	344	75	49	169	10	39	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	a0002	352	48	10	19	12	2	5	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	a0003	352	2	2	0	0	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	a0004	352	1	0	0	1	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBC_chr12_57429784_57457062	0/0	a0005	352	1	1	0	0	0	0	copy fasta	INHBC	chr12	57429784	57457062
INHBE_chr12_57450307_57463025	1/1	a0001	350	442	99	80	209	11	41	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	a0002	350	1	0	0	0	1	0	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	a0003	350	1	0	0	1	0	0	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	a0004	350	1	1	0	0	0	0	copy fasta	INHBE	chr12	57450307	57463025
INHBE_chr12_57450307_57463025	0/0	a0005	350	1	0	0	0	0	1	copy fasta	INHBE	chr12	57450307	57463025
INIP_chr9_112678926_112723117	1/1	a0001	104	372	82	70	166	14	38	copy fasta	INIP	chr9	112678926	112723117
INKA1_chr3_49798261_49810030	1/1	a0001	285	341	83	78	122	14	42	copy fasta	INKA1	chr3	49798261	49810030
INKA1_chr3_49798261_49810030	0/0	a0002	254	2	2	0	0	0	0	copy fasta	INKA1	chr3	49798261	49810030
INKA1_chr3_49798261_49810030	0/0	a0003	285	1	1	0	0	0	0	copy fasta	INKA1	chr3	49798261	49810030
INKA2_chr1_111717064_111744395	1/1	a0001	297	433	96	74	199	16	46	copy fasta	INKA2	chr1	111717064	111744395
INKA2_chr1_111717064_111744395	0/0	a0002	297	1	0	0	1	0	0	copy fasta	INKA2	chr1	111717064	111744395
INMT_chr7_30747135_30762602	0/0	a0000	0	5	0	3	0	0	2	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/1	a0001	263	156	3	33	102	6	11	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	1/0	a0002	263	82	30	7	34	4	6	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	a0003	263	47	9	2	28	0	8	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	a0004	263	42	10	6	23	1	2	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	a0005	263	36	5	13	6	4	8	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	a0006	263	35	19	11	0	2	3	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	a0007	263	11	9	2	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	a0008	263	4	0	0	0	0	4	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	a0009	263	4	3	1	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	a0010	263	4	0	0	3	1	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	a0011	122	2	2	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	a0012	263	2	0	0	0	0	2	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	a0013	263	1	0	0	0	0	1	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	a0014	263	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	a0015	263	1	1	0	0	0	0	copy fasta	INMT	chr7	30747135	30762602
INMT_chr7_30747135_30762602	0/0	a0016	263	1	0	0	0	0	1	copy fasta	INMT	chr7	30747135	30762602
INO80B_chr2_74450087_74462944	1/1	a0001	356	324	87	74	110	16	35	copy fasta	INO80B	chr2	74450087	74462944
INO80B_chr2_74450087_74462944	0/0	a0002	356	2	0	0	2	0	0	copy fasta	INO80B	chr2	74450087	74462944
INO80B_chr2_74450087_74462944	0/0	a0003	356	1	0	0	0	0	1	copy fasta	INO80B	chr2	74450087	74462944