JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
INO80B_chr2_74450087_74462944	0/0	a0004	356	1	0	0	1	0	0	copy fasta	INO80B	chr2	74450087	74462944
INO80B_chr2_74450087_74462944	0/0	a0005	356	1	0	0	1	0	0	copy fasta	INO80B	chr2	74450087	74462944
INO80B_chr2_74450087_74462944	0/0	a0006	356	1	1	0	0	0	0	copy fasta	INO80B	chr2	74450087	74462944
INO80C_chr18_35463333_35502960	1/1	a0001	192	389	89	66	174	10	48	copy fasta	INO80C	chr18	35463333	35502960
INO80C_chr18_35463333_35502960	0/0	a0002	192	1	1	0	0	0	0	copy fasta	INO80C	chr18	35463333	35502960
INO80D_chr2_205988721_206091174	1/1	a0001	1027	221	58	50	80	11	20	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	a0002	1027	105	20	19	42	5	19	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	a0003	1027	3	0	0	3	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	a0004	1027	2	1	1	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	a0005	1027	1	1	0	0	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	a0006	1027	1	0	0	0	0	1	copy fasta	INO80D	chr2	205988721	206091174
INO80D_chr2_205988721_206091174	0/0	a0007	1027	1	0	0	1	0	0	copy fasta	INO80D	chr2	205988721	206091174
INO80E_chr16_29991241_30010791	1/1	a0001	244	339	84	61	147	14	31	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	a0002	244	1	0	0	1	0	0	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	a0003	244	1	0	0	0	0	1	copy fasta	INO80E	chr16	29991241	30010791
INO80E_chr16_29991241_30010791	0/0	a0004	244	1	0	1	0	0	0	copy fasta	INO80E	chr16	29991241	30010791
INO80_chr15_40973880_41121280	1/1	a0001	1556	277	83	52	103	10	27	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	a0002	1556	1	0	0	1	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	a0003	1556	1	0	0	0	0	1	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	a0004	1556	1	1	0	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	a0005	1556	1	0	1	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INO80_chr15_40973880_41121280	0/0	a0006	1556	1	0	1	0	0	0	copy fasta	INO80	chr15	40973880	41121280
INPP1_chr2_190338589_190376665	1/1	a0001	399	393	73	73	194	16	35	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	a0002	399	16	15	1	0	0	0	copy fasta	INPP1	chr2	190338589	190376665
INPP1_chr2_190338589_190376665	0/0	a0003	399	1	0	0	0	0	1	copy fasta	INPP1	chr2	190338589	190376665
INPP4A_chr2_98439858_98599392	1/0	a0001	972	164	49	35	50	8	21	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/1	a0002	972	107	21	26	47	4	8	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	a0003	972	1	0	0	0	0	1	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	a0004	972	1	0	1	0	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4A_chr2_98439858_98599392	0/0	a0005	972	1	0	0	1	0	0	copy fasta	INPP4A	chr2	98439858	98599392
INPP4B_chr4_142018160_142851301	0/0	a0001	924	83	54	14	8	2	5	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	a0002	924	6	2	2	2	0	0	copy fasta	INPP4B	chr4	142018160	142851301
INPP4B_chr4_142018160_142851301	0/0	a0003	924	1	0	0	0	0	1	copy fasta	INPP4B	chr4	142018160	142851301
INPP5A_chr10_132532787_132788480	1/1	a0001	412	165	63	39	31	5	25	copy fasta	INPP5A	chr10	132532787	132788480
INPP5A_chr10_132532787_132788480	0/0	a0002	412	39	3	9	17	5	5	copy fasta	INPP5A	chr10	132532787	132788480
INPP5B_chr1_37855697_37952053	1/1	a0001	913	176	65	23	68	5	13	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	a0002	913	136	11	35	70	7	13	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	a0003	913	16	2	6	0	2	6	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	a0004	913	6	6	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	a0005	913	4	0	0	4	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	a0006	913	2	2	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	a0007	913	2	2	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	a0008	913	1	0	0	1	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	a0009	913	1	1	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	a0010	913	1	0	0	1	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5B_chr1_37855697_37952053	0/0	a0011	913	1	1	0	0	0	0	copy fasta	INPP5B	chr1	37855697	37952053
INPP5D_chr2_233055342_233212903	1/1	a0001	1189	229	66	43	67	10	41	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	a0002	1189	72	19	15	32	1	5	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	a0003	1189	3	0	3	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	a0004	1189	2	0	0	1	1	0	copy fasta	INPP5D	chr2	233055342	233212903