JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
INPP5D_chr2_233055342_233212903	0/0	a0005	1189	1	1	0	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	a0006	1189	1	0	0	1	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	a0007	1189	1	0	1	0	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5D_chr2_233055342_233212903	0/0	a0008	1189	1	0	0	1	0	0	copy fasta	INPP5D	chr2	233055342	233212903
INPP5E_chr9_136423619_136444845	1/1	a0001	644	370	96	77	136	18	41	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	a0002	644	3	0	2	0	0	1	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	a0003	644	1	0	0	1	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	a0004	644	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	a0005	644	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	a0006	644	1	0	0	1	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	a0007	644	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	a0008	644	1	0	1	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	a0009	644	1	0	0	0	0	1	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	a0010	644	1	1	0	0	0	0	copy fasta	INPP5E	chr9	136423619	136444845
INPP5E_chr9_136423619_136444845	0/0	a0011	644	1	0	0	0	0	1	copy fasta	INPP5E	chr9	136423619	136444845
INPP5F_chr10_119721050_119834147	1/1	a0001	1132	224	63	47	80	6	26	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	a0002	1132	83	19	17	33	6	8	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	a0003	1132	5	0	0	5	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	a0004	1131	4	0	2	1	1	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	a0005	1132	2	0	0	2	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	a0006	1132	2	0	0	2	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	a0007	1132	2	1	1	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	a0008	1132	1	0	0	1	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	a0009	1132	1	1	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	a0010	1132	1	1	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	a0011	1132	1	1	0	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	a0012	1131	1	0	0	0	1	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5F_chr10_119721050_119834147	0/0	a0013	1132	1	0	1	0	0	0	copy fasta	INPP5F	chr10	119721050	119834147
INPP5J_chr22_31117966_31139697	1/0	a0001	1006	225	72	41	82	11	18	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/1	a0002	1006	159	6	31	96	5	20	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0003	1006	14	14	0	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0004	1006	5	0	0	5	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0005	1006	3	0	0	3	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0006	1006	2	0	0	0	0	2	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0007	1006	2	1	1	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0008	1006	2	0	2	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0009	1006	1	0	0	1	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0010	1006	1	0	1	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0011	1006	1	1	0	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0012	1006	1	1	0	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0013	1006	1	0	0	0	0	1	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0014	1006	1	0	1	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0015	1006	1	1	0	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0016	1006	1	0	1	0	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0017	1006	1	0	0	0	0	1	copy fasta	INPP5J	chr22	31117966	31139697
INPP5J_chr22_31117966_31139697	0/0	a0018	984	1	0	0	1	0	0	copy fasta	INPP5J	chr22	31117966	31139697
INPP5K_chr17_1489577_1521612	1/1	a0001	448	409	85	80	185	16	41	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	a0002	448	2	2	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	a0003	444	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	a0004	448	1	0	0	0	0	1	copy fasta	INPP5K	chr17	1489577	1521612