JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
INPP5K_chr17_1489577_1521612	0/0	a0005	448	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	a0006	448	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	a0007	448	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	a0008	448	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	a0009	448	1	0	0	1	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	a0010	448	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPP5K_chr17_1489577_1521612	0/0	a0011	448	1	1	0	0	0	0	copy fasta	INPP5K	chr17	1489577	1521612
INPPL1_chr11_72219767_72244147	1/0	a0001	1258	255	59	43	102	10	40	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	a0002	1258	49	27	10	11	1	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	a0003	1258	19	4	1	14	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/1	a0004	1258	10	0	0	8	1	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	a0005	1258	2	0	0	2	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	a0006	1258	1	0	0	1	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	a0007	1258	1	0	0	1	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INPPL1_chr11_72219767_72244147	0/0	a0008	1258	1	0	0	1	0	0	copy fasta	INPPL1	chr11	72219767	72244147
INSC_chr11_15109923_15252208	1/1	a0001	532	243	76	46	83	9	27	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	a0002	532	10	10	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	a0003	532	6	0	1	0	1	4	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	a0004	532	5	5	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	a0005	532	2	0	1	0	0	1	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	a0006	532	1	0	0	1	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	a0007	532	1	0	1	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	a0008	532	1	0	1	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSC_chr11_15109923_15252208	0/0	a0009	532	1	1	0	0	0	0	copy fasta	INSC	chr11	15109923	15252208
INSIG1_chr7_155292878_155315235	1/1	a0001	277	441	96	76	215	18	34	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	a0002	277	1	0	0	1	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	a0003	277	1	0	0	1	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG1_chr7_155292878_155315235	0/0	a0004	277	1	0	0	1	0	0	copy fasta	INSIG1	chr7	155292878	155315235
INSIG2_chr2_118083471_118115997	1/1	a0001	225	437	96	80	199	16	44	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	a0002	225	2	0	0	2	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSIG2_chr2_118083471_118115997	0/0	a0003	240	1	0	0	1	0	0	copy fasta	INSIG2	chr2	118083471	118115997
INSL3_chr19_17811512_17826519	0/1	a0001	131	314	89	51	137	8	28	copy fasta	INSL3	chr19	17811512	17826519
INSL3_chr19_17811512_17826519	1/0	a0002	131	135	11	31	62	8	22	copy fasta	INSL3	chr19	17811512	17826519
INSL3_chr19_17811512_17826519	0/0	a0003	131	2	0	0	2	0	0	copy fasta	INSL3	chr19	17811512	17826519
INSL3_chr19_17811512_17826519	0/0	a0004	131	1	0	0	1	0	0	copy fasta	INSL3	chr19	17811512	17826519
INSL4_chr9_5226419_5240304	1/1	a0001	139	412	82	80	192	14	42	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	a0002	139	8	8	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	a0003	16	5	5	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	a0004	139	1	0	1	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	a0005	139	1	1	0	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL4_chr9_5226419_5240304	0/0	a0006	139	1	0	1	0	0	0	copy fasta	INSL4	chr9	5226419	5240304
INSL5_chr1_66792740_66806276	0/1	a0001	135	405	74	67	211	14	38	copy fasta	INSL5	chr1	66792740	66806276
INSL5_chr1_66792740_66806276	1/0	a0002	135	42	19	13	0	3	6	copy fasta	INSL5	chr1	66792740	66806276
INSL5_chr1_66792740_66806276	0/0	a0003	96	1	0	0	1	0	0	copy fasta	INSL5	chr1	66792740	66806276
INSL5_chr1_66792740_66806276	0/0	a0004	135	1	1	0	0	0	0	copy fasta	INSL5	chr1	66792740	66806276
INSL5_chr1_66792740_66806276	0/0	a0005	135	1	0	0	0	1	0	copy fasta	INSL5	chr1	66792740	66806276
INSL6_chr9_5158868_5190639	1/1	a0001	213	330	44	74	156	8	46	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	a0002	213	38	36	2	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	a0003	213	11	10	1	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	a0004	213	2	2	0	0	0	0	copy fasta	INSL6	chr9	5158868	5190639