JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
INSL6_chr9_5158868_5190639	0/0	a0005	213	2	2	0	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSL6_chr9_5158868_5190639	0/0	a0006	213	1	0	1	0	0	0	copy fasta	INSL6	chr9	5158868	5190639
INSM1_chr20_20363104_20375949	1/1	a0001	510	440	96	74	204	18	46	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	a0002	510	1	0	1	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM1_chr20_20363104_20375949	0/0	a0003	510	1	0	1	0	0	0	copy fasta	INSM1	chr20	20363104	20375949
INSM2_chr14_35529164_35542054	0/1	a0001	566	390	82	65	185	12	45	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	a0002	566	3	0	0	3	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	a0003	566	3	3	0	0	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	a0004	566	2	2	0	0	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	a0005	566	1	0	1	0	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	1/0	a0006	566	1	0	0	0	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	a0007	566	1	1	0	0	0	0	copy fasta	INSM2	chr14	35529164	35542054
INSM2_chr14_35529164_35542054	0/0	a0008	566	1	0	0	0	0	1	copy fasta	INSM2	chr14	35529164	35542054
INSRR_chr1_156835063_156864117	1/1	a0001	1297	271	68	64	96	12	29	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	a0002	1297	72	27	9	24	1	11	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	a0003	1297	3	3	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	a0004	1297	1	0	0	0	0	1	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	a0005	1297	1	0	0	0	0	1	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	a0006	1297	1	0	0	0	1	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	a0007	1185	1	0	0	1	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	a0008	1297	1	0	1	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	a0009	1297	1	1	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	a0010	1297	1	0	0	1	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	a0011	1297	1	0	0	1	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	a0012	1297	1	0	0	1	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSRR_chr1_156835063_156864117	0/0	a0013	1297	1	1	0	0	0	0	copy fasta	INSRR	chr1	156835063	156864117
INSR_chr19_7107265_7299414	0/1	a0001	1382	292	85	68	91	10	37	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	a0002	1382	2	0	1	0	0	1	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	1/0	a0003	1382	1	0	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	a0004	1382	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	a0005	1382	1	0	0	1	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	a0006	1382	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	a0007	1382	1	1	0	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSR_chr19_7107265_7299414	0/0	a0008	1382	1	0	1	0	0	0	copy fasta	INSR	chr19	7107265	7299414
INSYN1_chr15_73730458_73758351	1/1	a0001	293	401	94	78	173	12	42	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	a0002	293	2	0	0	0	2	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	a0003	293	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	a0004	293	1	0	0	1	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN1_chr15_73730458_73758351	0/0	a0005	293	1	1	0	0	0	0	copy fasta	INSYN1	chr15	73730458	73758351
INSYN2A_chr10_127130430_127201591	1/1	a0001	479	238	71	52	91	7	15	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	a0002	479	35	5	13	4	5	8	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	a0003	479	6	5	1	0	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	a0004	479	4	3	0	1	0	0	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2A_chr10_127130430_127201591	0/0	a0005	479	1	0	0	0	0	1	copy fasta	INSYN2A	chr10	127130430	127201591
INSYN2B_chr5_169856303_169985495	1/0	a0001	535	176	52	17	87	5	14	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/1	a0002	535	133	38	34	34	11	15	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	a0003	535	5	0	0	0	0	5	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	a0004	535	2	0	0	2	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	a0005	535	1	0	0	1	0	0	copy fasta	INSYN2B	chr5	169856303	169985495
INSYN2B_chr5_169856303_169985495	0/0	a0006	535	1	0	1	0	0	0	copy fasta	INSYN2B	chr5	169856303	169985495