JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
INS_chr11_2154779_2166209	1/1	a0001	110	370	91	76	145	18	38	copy fasta	INS	chr11	2154779	2166209
INS_chr11_2154779_2166209	0/0	a0002	110	5	0	0	5	0	0	copy fasta	INS	chr11	2154779	2166209
INS_chr11_2154779_2166209	0/0	a0003	110	1	1	0	0	0	0	copy fasta	INS	chr11	2154779	2166209
INTS10_chr8_19812416_19857067	1/1	a0001	710	412	95	76	177	16	46	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	a0002	492	2	0	0	0	2	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	a0003	710	1	0	1	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	a0004	710	1	1	0	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	a0005	710	1	0	0	1	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	a0006	710	1	1	0	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	a0007	710	1	0	1	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS10_chr8_19812416_19857067	0/0	a0008	710	1	1	0	0	0	0	copy fasta	INTS10	chr8	19812416	19857067
INTS11_chr1_1306600_1329660	1/1	a0001	600	352	91	59	136	16	48	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	a0002	16	1	0	1	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS11_chr1_1306600_1329660	0/0	a0003	600	1	1	0	0	0	0	copy fasta	INTS11	chr1	1306600	1329660
INTS12_chr4_105677627_105713689	1/1	a0001	462	309	90	56	131	14	16	copy fasta	INTS12	chr4	105677627	105713689
INTS12_chr4_105677627_105713689	0/0	a0002	462	1	0	0	1	0	0	copy fasta	INTS12	chr4	105677627	105713689
INTS12_chr4_105677627_105713689	0/0	a0003	462	1	0	0	1	0	0	copy fasta	INTS12	chr4	105677627	105713689
INTS12_chr4_105677627_105713689	0/0	a0004	462	1	0	0	1	0	0	copy fasta	INTS12	chr4	105677627	105713689
INTS13_chr12_26900181_26942981	1/1	a0001	706	386	91	68	164	16	45	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	0/0	a0002	706	1	0	0	0	0	1	copy fasta	INTS13	chr12	26900181	26942981
INTS13_chr12_26900181_26942981	0/0	a0003	706	1	1	0	0	0	0	copy fasta	INTS13	chr12	26900181	26942981
INTS14_chr15_65573757_65616131	1/1	a0001	518	320	92	52	123	12	39	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	a0002	518	1	0	0	0	0	1	copy fasta	INTS14	chr15	65573757	65616131
INTS14_chr15_65573757_65616131	0/0	a0003	518	1	0	0	1	0	0	copy fasta	INTS14	chr15	65573757	65616131
INTS15_chr7_6585021_6613726	1/1	a0001	449	387	89	76	161	16	43	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/0	a0002	449	5	5	0	0	0	0	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/0	a0003	449	1	0	0	0	0	1	copy fasta	INTS15	chr7	6585021	6613726
INTS15_chr7_6585021_6613726	0/0	a0004	449	1	0	0	1	0	0	copy fasta	INTS15	chr7	6585021	6613726
INTS1_chr7_1465277_1509389	1/1	a0001	2190	294	81	66	103	14	28	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0002	2190	3	3	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0003	2190	2	2	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0004	2190	2	2	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0005	2190	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0006	2175	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0007	2190	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0008	2190	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0009	2190	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0010	2190	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0011	2190	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0012	2190	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0013	2190	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0014	2190	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0015	2190	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0016	2190	1	0	1	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0017	2190	1	0	1	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0018	2190	1	0	0	1	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS1_chr7_1465277_1509389	0/0	a0019	2190	1	1	0	0	0	0	copy fasta	INTS1	chr7	1465277	1509389
INTS2_chr17_61860367_61932982	0/1	a0001	1196	360	84	59	169	12	35	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	a0002	1196	1	0	0	1	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	a0003	1196	1	0	0	1	0	0	copy fasta	INTS2	chr17	61860367	61932982