JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
INTS2_chr17_61860367_61932982	0/0	a0004	1196	1	0	0	1	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	a0005	1196	1	0	0	0	0	1	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	1/0	a0006	1196	1	0	0	0	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS2_chr17_61860367_61932982	0/0	a0007	1196	1	0	1	0	0	0	copy fasta	INTS2	chr17	61860367	61932982
INTS3_chr1_153723050_153779808	0/1	a0001	1042	347	88	60	144	12	42	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	a0002	1042	1	1	0	0	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS3_chr1_153723050_153779808	0/0	a0003	818	1	1	0	0	0	0	copy fasta	INTS3	chr1	153723050	153779808
INTS4_chr11_77873720_77999668	1/1	a0001	963	351	73	61	168	16	31	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	a0002	963	6	6	0	0	0	0	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	a0003	963	2	2	0	0	0	0	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	a0004	963	1	0	0	0	0	1	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	a0005	963	1	0	1	0	0	0	copy fasta	INTS4	chr11	77873720	77999668
INTS4_chr11_77873720_77999668	0/0	a0006	963	1	1	0	0	0	0	copy fasta	INTS4	chr11	77873720	77999668
INTS5_chr11_62641848_62658302	1/1	a0001	1019	362	90	74	143	16	37	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	a0002	1019	2	0	0	2	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	a0003	1019	1	1	0	0	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	a0004	1019	1	0	0	1	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	a0005	918	1	1	0	0	0	0	copy fasta	INTS5	chr11	62641848	62658302
INTS5_chr11_62641848_62658302	0/0	a0006	1019	1	0	0	0	0	1	copy fasta	INTS5	chr11	62641848	62658302
INTS6L_chrX_135515660_135587510	1/1	a0001	898	237	60	36	108	9	22	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	a0002	898	3	0	3	0	0	0	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	a0003	554	1	0	0	1	0	0	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	a0004	409	1	0	0	1	0	0	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	a0005	409	1	0	0	1	0	0	copy fasta	INTS6L	chrX	135515660	135587510
INTS6L_chrX_135515660_135587510	0/0	a0006	898	1	0	0	1	0	0	copy fasta	INTS6L	chrX	135515660	135587510
INTS6_chr13_51356577_51458036	1/1	a0001	887	357	81	68	152	12	42	copy fasta	INTS6	chr13	51356577	51458036
INTS6_chr13_51356577_51458036	0/0	a0002	887	1	1	0	0	0	0	copy fasta	INTS6	chr13	51356577	51458036
INTS7_chr1_211935403_212040557	1/1	a0001	962	344	71	62	149	16	44	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	a0002	962	4	4	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	a0003	962	1	0	0	1	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	a0004	962	1	1	0	0	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	a0005	962	1	0	0	1	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS7_chr1_211935403_212040557	0/0	a0006	962	1	0	0	1	0	0	copy fasta	INTS7	chr1	211935403	212040557
INTS8_chr8_94818287_94886746	1/1	a0001	995	304	92	51	118	10	31	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	a0002	995	1	0	0	1	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	a0003	995	1	0	1	0	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	a0004	995	1	0	0	1	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	a0005	995	1	0	0	0	0	1	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	a0006	995	1	0	0	1	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS8_chr8_94818287_94886746	0/0	a0007	995	1	0	0	1	0	0	copy fasta	INTS8	chr8	94818287	94886746
INTS9_chr8_28762661_28894969	1/1	a0001	658	355	90	62	153	12	36	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	a0002	658	1	0	0	1	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	a0003	658	1	1	0	0	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTS9_chr8_28762661_28894969	0/0	a0004	658	1	1	0	0	0	0	copy fasta	INTS9	chr8	28762661	28894969
INTU_chr4_127627957_127731737	1/1	a0001	942	267	81	57	87	14	26	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	a0002	942	69	0	7	62	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	a0003	942	10	0	0	10	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	a0004	942	3	3	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	a0005	942	3	3	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	a0006	942	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737