JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
INTU_chr4_127627957_127731737	0/0	a0007	942	1	1	0	0	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	a0008	942	1	0	0	0	0	1	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	a0009	942	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	a0010	942	1	0	0	0	0	1	copy fasta	INTU	chr4	127627957	127731737
INTU_chr4_127627957_127731737	0/0	a0011	942	1	0	0	1	0	0	copy fasta	INTU	chr4	127627957	127731737
INVS_chr9_100094243_100307175	1/1	a0001	1065	169	63	40	41	9	14	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	a0002	1065	7	2	4	0	1	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	a0003	1065	2	1	1	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	a0004	1065	1	0	1	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	a0005	1065	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	a0006	1065	1	1	0	0	0	0	copy fasta	INVS	chr9	100094243	100307175
INVS_chr9_100094243_100307175	0/0	a0007	283	1	0	0	1	0	0	copy fasta	INVS	chr9	100094243	100307175
IP6K1_chr3_49719294_49791542	1/1	a0001	441	255	80	47	94	10	22	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	a0002	441	3	3	0	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	a0003	441	1	0	1	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K1_chr3_49719294_49791542	0/0	a0004	441	1	1	0	0	0	0	copy fasta	IP6K1	chr3	49719294	49791542
IP6K2_chr3_48683003_48722221	1/1	a0001	426	258	82	44	84	16	30	copy fasta	IP6K2	chr3	48683003	48722221
IP6K2_chr3_48683003_48722221	0/0	a0002	426	3	3	0	0	0	0	copy fasta	IP6K2	chr3	48683003	48722221
IP6K2_chr3_48683003_48722221	0/0	a0003	426	1	1	0	0	0	0	copy fasta	IP6K2	chr3	48683003	48722221
IP6K3_chr6_33716662_33751905	1/1	a0001	410	165	79	28	44	8	4	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0002	410	163	8	33	83	8	31	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0003	410	14	3	4	4	0	3	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0004	410	6	0	4	0	2	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0005	410	3	3	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0006	410	2	0	0	2	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0007	410	2	0	0	1	0	1	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0008	410	2	1	1	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0009	410	2	2	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0010	410	1	1	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0011	410	1	0	0	1	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0012	410	1	0	0	0	0	1	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0013	410	1	1	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0014	410	1	0	0	1	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0015	410	1	1	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IP6K3_chr6_33716662_33751905	0/0	a0016	410	1	1	0	0	0	0	copy fasta	IP6K3	chr6	33716662	33751905
IPCEF1_chr6_154149496_154361803	1/1	a0001	438	255	84	52	77	8	32	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	a0002	438	5	5	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	a0003	438	2	2	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	a0004	438	1	1	0	0	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPCEF1_chr6_154149496_154361803	0/0	a0005	438	1	0	0	1	0	0	copy fasta	IPCEF1	chr6	154149496	154361803
IPMK_chr10_58186517_58272894	1/1	a0001	416	274	84	49	104	4	31	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	a0002	416	68	5	5	51	0	7	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	a0003	416	1	0	0	1	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	a0004	416	1	1	0	0	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	a0005	416	1	0	0	1	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPMK_chr10_58186517_58272894	0/0	a0006	416	1	0	0	1	0	0	copy fasta	IPMK	chr10	58186517	58272894
IPO11_chr5_62407763_62633582	1/1	a0001	975	327	72	54	157	16	26	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	a0002	975	1	1	0	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	a0003	975	1	1	0	0	0	0	copy fasta	IPO11	chr5	62407763	62633582
IPO11_chr5_62407763_62633582	0/0	a0004	975	1	0	0	1	0	0	copy fasta	IPO11	chr5	62407763	62633582