Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABCA9_chr17_68969488_69065927	0/0	a0004	1624	18	16	2	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0005	1624	14	0	4	9	0	1	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0006	1624	5	0	5	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0007	1624	5	2	3	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0008	1624	3	2	1	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0009	1624	2	2	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0010	1049	2	0	2	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0011	1624	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0012	1624	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0013	1624	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0014	1624	1	0	0	1	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0015	1624	1	0	0	1	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0016	1624	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0017	1624	1	0	0	1	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0018	1624	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0019	1624	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0020	1624	1	0	0	0	0	1	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0021	1624	1	0	0	1	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0022	1624	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCA9_chr17_68969488_69065927	0/0	a0023	1624	1	1	0	0	0	0	copy fasta	ABCA9	chr17	68969488	69065927
ABCB10_chr1_229511582_229563707	1/1	a0001	738	240	70	61	68	9	30	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	a0002	738	17	14	1	1	1	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	a0003	738	10	0	5	5	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	a0004	738	6	5	1	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	a0005	738	3	0	1	0	2	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	a0006	738	3	1	2	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	a0007	738	2	2	0	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	a0008	738	1	0	0	1	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	a0009	738	1	0	0	1	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB10_chr1_229511582_229563707	0/0	a0010	738	1	0	1	0	0	0	copy fasta	ABCB10	chr1	229511582	229563707
ABCB11_chr2_168915781_169036324	0/1	a0001	1321	161	33	25	85	2	15	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	1/0	a0002	1321	100	31	26	29	3	10	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	a0003	1321	16	15	1	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	a0004	1321	8	5	1	0	1	1	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	a0005	1321	6	0	0	1	0	5	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	a0006	1321	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	a0007	1321	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	a0008	1321	2	0	0	2	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	a0009	1321	2	2	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	a0010	1321	1	0	1	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	a0011	1321	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	a0012	1321	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	a0013	1321	1	0	0	1	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	a0014	1321	1	0	0	0	0	1	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	a0015	1321	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB11_chr2_168915781_169036324	0/0	a0016	1321	1	1	0	0	0	0	copy fasta	ABCB11	chr2	168915781	169036324
ABCB1_chr7_87498017_87605884	0/0	a0001	1280	212	78	40	69	10	15	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	1/0	a0002	1280	74	4	12	38	4	15	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0003	1280	35	0	7	26	0	2	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	a0004	1280	5	4	1	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884