Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALYREF_chr17_81882835_81896586	0/0	a0003	268	1	1	0	0	0	0	copy fasta	ALYREF	chr17	81882835	81896586
AMACR_chr5_33981165_34013050	0/0	a0001	382	140	40	16	72	4	8	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0002	382	109	3	25	76	2	3	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	1/0	a0003	382	57	6	14	14	0	22	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/1	a0004	382	39	3	2	25	0	8	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0005	382	28	6	5	15	1	1	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0006	382	12	9	2	1	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0007	382	11	0	2	8	0	1	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0008	382	10	10	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0009	382	9	3	1	3	0	2	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0010	382	5	4	1	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0011	382	4	4	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0012	382	4	1	1	0	1	1	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0013	382	3	3	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0014	382	2	2	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0015	382	2	2	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0016	382	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0017	150	1	1	0	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMACR_chr5_33981165_34013050	0/0	a0018	382	1	0	1	0	0	0	copy fasta	AMACR	chr5	33981165	34013050
AMBN_chr4_70587256_70612288	0/0	a0000	0	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	1/1	a0001	447	375	62	74	189	11	37	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0002	446	47	6	5	27	6	3	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0003	447	10	9	1	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0004	447	7	7	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0005	447	6	0	0	6	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0006	447	5	4	1	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0007	447	4	0	2	0	1	1	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0008	446	4	0	0	4	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0009	447	3	0	0	0	0	3	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0010	447	2	2	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0011	447	2	2	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0012	447	2	0	0	0	0	2	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0013	447	2	2	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0014	447	1	1	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0015	447	1	0	0	0	0	1	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0016	447	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0017	389	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0018	447	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0019	296	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0020	446	1	0	1	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0021	446	1	0	0	0	0	1	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0022	447	1	1	0	0	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBN_chr4_70587256_70612288	0/0	a0023	447	1	0	0	1	0	0	copy fasta	AMBN	chr4	70587256	70612288
AMBP_chr9_114055127_114083300	1/1	a0001	352	447	96	83	205	18	43	copy fasta	AMBP	chr9	114055127	114083300
AMBP_chr9_114055127_114083300	0/0	a0002	352	4	0	0	0	0	4	copy fasta	AMBP	chr9	114055127	114083300
AMBP_chr9_114055127_114083300	0/0	a0003	352	1	0	0	0	0	1	copy fasta	AMBP	chr9	114055127	114083300
AMBP_chr9_114055127_114083300	0/0	a0004	352	1	0	1	0	0	0	copy fasta	AMBP	chr9	114055127	114083300
AMBP_chr9_114055127_114083300	0/0	a0005	352	1	0	0	1	0	0	copy fasta	AMBP	chr9	114055127	114083300
AMBRA1_chr11_46391414_46599023	1/1	a0001	1298	155	80	25	32	2	14	copy fasta	AMBRA1	chr11	46391414	46599023
AMBRA1_chr11_46391414_46599023	0/0	a0002	1298	1	1	0	0	0	0	copy fasta	AMBRA1	chr11	46391414	46599023