JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
IPPK_chr9_92608183_92675131	0/0	a0004	491	3	0	0	3	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	a0005	491	1	0	0	1	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPPK_chr9_92608183_92675131	0/0	a0006	491	1	0	0	1	0	0	copy fasta	IPPK	chr9	92608183	92675131
IPP_chr1_45693711_45755653	1/1	a0001	584	78	58	11	3	0	4	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	0/0	a0002	584	48	20	11	9	0	8	copy fasta	IPP	chr1	45693711	45755653
IPP_chr1_45693711_45755653	0/0	a0003	584	2	2	0	0	0	0	copy fasta	IPP	chr1	45693711	45755653
IQANK1_chr8_143729139_143795645	0/1	a0001	560	107	9	12	66	3	16	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0002	560	90	1	17	64	3	5	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0003	560	38	36	1	0	0	1	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0004	560	31	1	16	1	8	5	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0005	560	16	3	1	8	1	3	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0006	560	8	4	3	1	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0007	560	8	8	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0008	560	7	7	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0009	560	6	5	1	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0010	560	4	4	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0011	561	3	2	1	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0012	560	3	3	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0013	560	3	0	0	0	0	3	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0014	560	2	0	1	0	0	1	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0015	560	2	0	1	0	1	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0016	560	2	0	0	0	0	2	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0017	561	2	1	1	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0018	560	2	0	2	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0019	560	2	0	0	0	0	2	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0020	560	1	0	1	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0021	560	1	0	0	1	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0022	560	1	0	0	1	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0023	560	1	0	0	0	0	1	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0024	560	1	0	0	0	0	1	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0025	560	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0026	560	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0027	560	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0028	560	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0029	560	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0030	560	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0031	560	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQANK1_chr8_143729139_143795645	0/0	a0032	560	1	1	0	0	0	0	copy fasta	IQANK1	chr8	143729139	143795645
IQCA1L_chr7_151185873_151210496	0/0	a0001	818	111	16	14	68	2	11	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0002	461	59	2	15	29	3	10	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0003	818	33	4	1	28	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0004	818	29	7	4	14	0	4	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0005	461	28	4	15	3	0	6	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	1/0	a0006	818	25	3	8	11	1	1	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0007	818	16	0	6	1	1	8	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0008	461	12	3	4	4	0	1	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0009	461	11	11	0	0	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/1	a0010	818	10	1	0	8	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0011	818	10	5	0	5	0	0	copy fasta	IQCA1L	chr7	151185873	151210496
IQCA1L_chr7_151185873_151210496	0/0	a0012	818	10	0	1	8	1	0	copy fasta	IQCA1L	chr7	151185873	151210496